(5 nodes) Double-stranded RNA-binding domain network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10495	DRBM domain-containing protein. (501 aa)
	T265_08800	Uncharacterized protein. (729 aa)
	T265_13119	DRBM domain-containing protein. (302 aa)
	T265_11305	Uncharacterized protein. (1596 aa)
	T265_09022	Uncharacterized protein. (1284 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_08800	T265_09022	A0A074Z857	A0A075A6E0	Uncharacterized protein.	Uncharacterized protein.	0.402
T265_08800	T265_11305	A0A074Z857	A0A074YZ46	Uncharacterized protein.	Uncharacterized protein.	0.891
T265_08800	T265_13119	A0A074Z857	A0A074ZUH6	Uncharacterized protein.	DRBM domain-containing protein.	0.533
T265_09022	T265_08800	A0A075A6E0	A0A074Z857	Uncharacterized protein.	Uncharacterized protein.	0.402
T265_09022	T265_11305	A0A075A6E0	A0A074YZ46	Uncharacterized protein.	Uncharacterized protein.	0.545
T265_11305	T265_08800	A0A074YZ46	A0A074Z857	Uncharacterized protein.	Uncharacterized protein.	0.891
T265_11305	T265_09022	A0A074YZ46	A0A075A6E0	Uncharacterized protein.	Uncharacterized protein.	0.545
T265_11305	T265_13119	A0A074YZ46	A0A074ZUH6	Uncharacterized protein.	DRBM domain-containing protein.	0.992
T265_13119	T265_08800	A0A074ZUH6	A0A074Z857	DRBM domain-containing protein.	Uncharacterized protein.	0.533
T265_13119	T265_11305	A0A074ZUH6	A0A074YZ46	DRBM domain-containing protein.	Uncharacterized protein.	0.992