(9 nodes) SANT domain network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_03399	Uncharacterized protein. (1460 aa)
	T265_03747	Uncharacterized protein. (770 aa)
	T265_14127	SANT domain-containing protein. (540 aa)
	T265_13859	Uncharacterized protein. (793 aa)
	T265_09123	Uncharacterized protein. (923 aa)
	T265_00769	Uncharacterized protein. (1001 aa)
	T265_13169	Uncharacterized protein. (446 aa)
	T265_01680	Uncharacterized protein. (690 aa)
	T265_04571	SANT domain-containing protein. (1401 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00769	T265_03399	A0A075AJE8	A0A074ZW83	Uncharacterized protein.	Uncharacterized protein.	0.714
T265_00769	T265_03747	A0A075AJE8	A0A074ZV70	Uncharacterized protein.	Uncharacterized protein.	0.476
T265_00769	T265_09123	A0A075AJE8	A0A074ZB95	Uncharacterized protein.	Uncharacterized protein.	0.476
T265_00769	T265_13169	A0A075AJE8	A0A075AHU3	Uncharacterized protein.	Uncharacterized protein.	0.425
T265_03399	T265_00769	A0A074ZW83	A0A075AJE8	Uncharacterized protein.	Uncharacterized protein.	0.714
T265_03747	T265_00769	A0A074ZV70	A0A075AJE8	Uncharacterized protein.	Uncharacterized protein.	0.476
T265_04571	T265_14127	A0A074ZZ86	A0A074ZR86	SANT domain-containing protein.	SANT domain-containing protein.	0.748
T265_09123	T265_00769	A0A074ZB95	A0A075AJE8	Uncharacterized protein.	Uncharacterized protein.	0.476
T265_13169	T265_00769	A0A075AHU3	A0A075AJE8	Uncharacterized protein.	Uncharacterized protein.	0.425
T265_14127	T265_04571	A0A074ZR86	A0A074ZZ86	SANT domain-containing protein.	SANT domain-containing protein.	0.748