(55 nodes) Tetratricopeptide repeat network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_02605	Uncharacterized protein. (542 aa)
	T265_00451	Uncharacterized protein. (966 aa)
	T265_14644	Uncharacterized protein. (791 aa)
	T265_01889	Uncharacterized protein. (403 aa)
	T265_12422	Uncharacterized protein. (937 aa)
	T265_05253	Uncharacterized protein. (1861 aa)
	T265_13695	TPR_REGION domain-containing protein. (775 aa)
	T265_03204	TPR_REGION domain-containing protein. (319 aa)
	T265_12454	Uncharacterized protein. (1304 aa)
	T265_14120	TPR_REGION domain-containing protein. (658 aa)
	T265_14212	Uncharacterized protein. (1618 aa)
	T265_15249	Uncharacterized protein. (727 aa)
	T265_15339	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1295 aa)
	T265_14915	TPR_REGION domain-containing protein. (297 aa)
	T265_08808	Uncharacterized protein. (1587 aa)
	T265_14764	Uncharacterized protein. (354 aa)
	T265_07454	Uncharacterized protein. (1250 aa)
	T265_09719	TPR_REGION domain-containing protein. (1256 aa)
	T265_11367	Uncharacterized protein. (2309 aa)
	T265_15381	Peptidylprolyl isomerase. (501 aa)
	T265_11161	Uncharacterized protein. (595 aa)
	T265_14958	TPR_REGION domain-containing protein. (294 aa)
	T265_10848	Uncharacterized protein. (786 aa)
	T265_08418	TPR_REGION domain-containing protein. (996 aa)
	T265_06040	Uncharacterized protein. (502 aa)
	T265_11626	MYND-type domain-containing protein. (772 aa)
	T265_06070	TPR_REGION domain-containing protein. (758 aa)
	T265_04894	TPR_REGION domain-containing protein. (273 aa)
	T265_04901	TPR_REGION domain-containing protein. (370 aa)
	T265_04868	Uncharacterized protein. (1180 aa)
	T265_07619	Uncharacterized protein. (589 aa)
	T265_13793	TPR_REGION domain-containing protein. (428 aa)
	T265_13358	TPR_REGION domain-containing protein. (483 aa)
	T265_04700	TPR_REGION domain-containing protein. (1301 aa)
	T265_13544	TPR_REGION domain-containing protein. (858 aa)
	T265_13239	Uncharacterized protein. (428 aa)
	T265_02820	Uncharacterized protein. (961 aa)
	T265_06092	TPR_REGION domain-containing protein. (494 aa)
	T265_02772	Tetratricopeptide repeat protein. (538 aa)
	T265_03894	Uncharacterized protein. (1261 aa)
	T265_13053	TPR_REGION domain-containing protein. (382 aa)
	T265_05649	Uncharacterized protein. (4489 aa)
	T265_02356	Uncharacterized protein. (846 aa)
	T265_02369	Peptidylprolyl isomerase. (769 aa)
	T265_01855	TPR_REGION domain-containing protein. (249 aa)
	T265_01911	TPR_REGION domain-containing protein. (165 aa)
	T265_01377	Uncharacterized protein. (1679 aa)
	T265_11089	Uncharacterized protein. (879 aa)
	T265_12759	Uncharacterized protein. (831 aa)
	T265_12611	Uncharacterized protein. (759 aa)
	T265_01590	Uncharacterized protein. (958 aa)
	T265_10083	TPR_REGION domain-containing protein. (547 aa)
	T265_14969	TPR_REGION domain-containing protein. (478 aa)
	T265_00854	Uncharacterized protein. (975 aa)
	T265_09395	SHNi-TPR domain-containing protein. (441 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00854	T265_05253	A0A075A4I1	A0A075AFI1	Uncharacterized protein.	Uncharacterized protein.	0.486
T265_00854	T265_12759	A0A075A4I1	A0A075A0C1	Uncharacterized protein.	Uncharacterized protein.	0.536
T265_01377	T265_02356	A0A074ZYF0	A0A074ZVF7	Uncharacterized protein.	Uncharacterized protein.	0.516
T265_01377	T265_05253	A0A074ZYF0	A0A075AFI1	Uncharacterized protein.	Uncharacterized protein.	0.724
T265_01377	T265_12759	A0A074ZYF0	A0A075A0C1	Uncharacterized protein.	Uncharacterized protein.	0.780
T265_01377	T265_14915	A0A074ZYF0	A0A074Z9J3	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.526
T265_01855	T265_01889	A0A074ZX96	A0A075A8A5	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.522
T265_01855	T265_05253	A0A074ZX96	A0A075AFI1	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.501
T265_01855	T265_06070	A0A074ZX96	A0A074ZHI0	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.564
T265_01855	T265_13695	A0A074ZX96	A0A075AFN2	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.477
T265_01889	T265_01855	A0A075A8A5	A0A074ZX96	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.522
T265_01889	T265_15381	A0A075A8A5	A0A074YZJ0	Uncharacterized protein.	Peptidylprolyl isomerase.	0.493
T265_01911	T265_14644	A0A074ZY14	A0A075A7H7	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.507
T265_01911	T265_15249	A0A074ZY14	A0A074ZC05	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.463
T265_02356	T265_01377	A0A074ZVF7	A0A074ZYF0	Uncharacterized protein.	Uncharacterized protein.	0.516
T265_02356	T265_05253	A0A074ZVF7	A0A075AFI1	Uncharacterized protein.	Uncharacterized protein.	0.872
T265_02356	T265_12759	A0A074ZVF7	A0A075A0C1	Uncharacterized protein.	Uncharacterized protein.	0.890
T265_02369	T265_03204	A0A074ZVH2	A0A075AHS0	Peptidylprolyl isomerase.	TPR_REGION domain-containing protein.	0.901
T265_02369	T265_10083	A0A074ZVH2	A0A075A2N4	Peptidylprolyl isomerase.	TPR_REGION domain-containing protein.	0.714
T265_02369	T265_15249	A0A074ZVH2	A0A074ZC05	Peptidylprolyl isomerase.	Uncharacterized protein.	0.418