(33 nodes) Mitochondrial carrier domain superfamily network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_06189	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (421 aa)
	T265_00554	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (189 aa)
	T265_01602	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (327 aa)
	T265_03537	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (320 aa)
	T265_05966	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (377 aa)
	T265_06535	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (387 aa)
	T265_01082	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (602 aa)
	T265_02036	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (291 aa)
	T265_00215	Integrase catalytic domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (639 aa)
	T265_03463	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (413 aa)
	T265_10025	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (303 aa)
	T265_10020	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (350 aa)
	T265_01787	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (991 aa)
	T265_01211	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (375 aa)
	T265_15398	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (184 aa)
	T265_13697	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (442 aa)
	T265_11656	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (335 aa)
	T265_04362	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (1480 aa)
	T265_04855	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (258 aa)
	T265_03831	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (114 aa)
	T265_09658	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (329 aa)
	T265_10330	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (313 aa)
	T265_10472	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (303 aa)
	T265_11755	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (120 aa)
	T265_14683	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (287 aa)
	T265_10465	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (126 aa)
	T265_10620	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (407 aa)
	T265_11742	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (305 aa)
	T265_11081	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (307 aa)
	T265_11219	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (290 aa)
	T265_11416	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (430 aa)
	T265_15525	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (414 aa)
	T265_16229	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (111 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00215	T265_04855	A0A075A6M7	A0A074ZR16	Integrase catalytic domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.713
T265_00215	T265_06535	A0A075A6M7	A0A075ADQ3	Integrase catalytic domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.737
T265_00554	T265_11742	A0A075AJN0	A0A074Z1Y6	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.629
T265_02036	T265_03831	A0A075A7Z2	A0A074ZQE8	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.532
T265_02036	T265_06535	A0A075A7Z2	A0A075ADQ3	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.552
T265_02036	T265_11219	A0A075A7Z2	A0A074YZI8	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.514
T265_03463	T265_10472	A0A075A317	A0A074ZD69	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.410
T265_03831	T265_02036	A0A074ZQE8	A0A075A7Z2	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.532
T265_04855	T265_00215	A0A074ZR16	A0A075A6M7	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Integrase catalytic domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.713
T265_04855	T265_09658	A0A074ZR16	A0A074ZG34	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.713
T265_04855	T265_10620	A0A074ZR16	A0A074Z5W5	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.433
T265_04855	T265_11219	A0A074ZR16	A0A074YZI8	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.457
T265_05966	T265_06535	A0A075AEL1	A0A075ADQ3	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.428
T265_06189	T265_10472	A0A074ZHC4	A0A074ZD69	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.442
T265_06189	T265_10620	A0A074ZHC4	A0A074Z5W5	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.416
T265_06189	T265_11416	A0A074ZHC4	A0A074YYQ3	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.457
T265_06535	T265_00215	A0A075ADQ3	A0A075A6M7	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Integrase catalytic domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.737
T265_06535	T265_02036	A0A075ADQ3	A0A075A7Z2	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.552
T265_06535	T265_05966	A0A075ADQ3	A0A075AEL1	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.428
T265_06535	T265_09658	A0A075ADQ3	A0A074ZG34	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.737