(17 nodes) BRCT domain superfamily network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_03168	Uncharacterized protein. (1218 aa)
	T265_15946	BRCT domain-containing protein. (135 aa)
	T265_10980	Uncharacterized protein. (1014 aa)
	T265_14797	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (603 aa)
	T265_08857	DNA ligase. (1154 aa)
	T265_10490	Poly [ADP-ribose] polymerase. (995 aa)
	T265_07244	Uncharacterized protein. (1454 aa)
	T265_05531	Uncharacterized protein. (1855 aa)
	T265_03169	BRCT domain-containing protein. (296 aa)
	T265_02110	Replication factor C subunit 1. (1093 aa)
	T265_02041	Uncharacterized protein. (1310 aa)
	T265_00076	Uncharacterized protein. (209 aa)
	T265_03025	FHA domain-containing protein. (1264 aa)
	T265_00347	Uncharacterized protein. (1449 aa)
	T265_02287	Uncharacterized protein. (1570 aa)
	T265_02061	BRCT domain-containing protein. (1151 aa)
	T265_03171	BRCT domain-containing protein. (1004 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00347	T265_02041	A0A075A6C3	A0A075A0P3	Uncharacterized protein.	Uncharacterized protein.	0.881
T265_00347	T265_02061	A0A075A6C3	A0A075A815	Uncharacterized protein.	BRCT domain-containing protein.	0.686
T265_00347	T265_03025	A0A075A6C3	A0A075A4N3	Uncharacterized protein.	FHA domain-containing protein.	0.566
T265_00347	T265_03168	A0A075A6C3	A0A074ZTI8	Uncharacterized protein.	Uncharacterized protein.	0.566
T265_00347	T265_03169	A0A075A6C3	A0A074ZWY1	Uncharacterized protein.	BRCT domain-containing protein.	0.566
T265_00347	T265_03171	A0A075A6C3	A0A075AHT4	Uncharacterized protein.	BRCT domain-containing protein.	0.566
T265_00347	T265_15946	A0A075A6C3	A0A074YZG2	Uncharacterized protein.	BRCT domain-containing protein.	0.601
T265_02041	T265_00347	A0A075A0P3	A0A075A6C3	Uncharacterized protein.	Uncharacterized protein.	0.881
T265_02041	T265_02061	A0A075A0P3	A0A075A815	Uncharacterized protein.	BRCT domain-containing protein.	0.668
T265_02041	T265_02110	A0A075A0P3	A0A075A0H7	Uncharacterized protein.	Replication factor C subunit 1.	0.571
T265_02041	T265_03025	A0A075A0P3	A0A075A4N3	Uncharacterized protein.	FHA domain-containing protein.	0.650
T265_02041	T265_03168	A0A075A0P3	A0A074ZTI8	Uncharacterized protein.	Uncharacterized protein.	0.650
T265_02041	T265_03169	A0A075A0P3	A0A074ZWY1	Uncharacterized protein.	BRCT domain-containing protein.	0.650
T265_02041	T265_03171	A0A075A0P3	A0A075AHT4	Uncharacterized protein.	BRCT domain-containing protein.	0.650
T265_02041	T265_07244	A0A075A0P3	A0A074ZDK9	Uncharacterized protein.	Uncharacterized protein.	0.408
T265_02041	T265_08857	A0A075A0P3	A0A074ZCA3	Uncharacterized protein.	DNA ligase.	0.542
T265_02041	T265_10490	A0A075A0P3	A0A074ZD58	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.402
T265_02041	T265_10980	A0A075A0P3	A0A074Z0K1	Uncharacterized protein.	Uncharacterized protein.	0.416
T265_02041	T265_14797	A0A075A0P3	A0A074Z6E9	Uncharacterized protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.526
T265_02041	T265_15946	A0A075A0P3	A0A074YZG2	Uncharacterized protein.	BRCT domain-containing protein.	0.768