41 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_16235	Uncharacterized protein. (143 aa)
	T265_16047	Uncharacterized protein. (68 aa)
	T265_15954	Uncharacterized protein. (392 aa)
	T265_15075	Uncharacterized protein. (799 aa)
	T265_15073	Reverse transcriptase domain-containing protein. (261 aa)
	T265_10985	WW domain-containing protein. (589 aa)
	T265_09614	SER_THR_PHOSPHATASE domain-containing protein. (92 aa)
	T265_09555	Uncharacterized protein. (1102 aa)
	T265_09096	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (245 aa)
	T265_10184	RNase_Zc3h12a domain-containing protein. (249 aa)
	T265_08327	Mitogen-activated protein kinase. (386 aa)
	T265_08012	Uncharacterized protein. (153 aa)
	T265_08050	Uncharacterized protein. (309 aa)
	T265_07440	Uncharacterized protein. (1814 aa)
	T265_08172	BZIP transcription factor. (443 aa)
	T265_08049	Uncharacterized protein. (545 aa)
	T265_09868	Non-specific serine/threonine protein kinase. (634 aa)
	T265_07863	Ubiquitin-like domain-containing protein. (128 aa)
	T265_06192	LisH domain-containing protein. (1408 aa)
	T265_06018	Mitogen-activated protein kinase. (1004 aa)
	T265_05597	ANK_REP_REGION domain-containing protein. (1408 aa)
	T265_06193	Uncharacterized protein. (114 aa)
	T265_07767	Ubiquitin carboxyl-terminal hydrolase. (533 aa)
	T265_13821	Uncharacterized protein. (324 aa)
	T265_04523	Protein kinase domain-containing protein. (308 aa)
	T265_06651	Protein kinase domain-containing protein. (403 aa)
	T265_13998	Protein kinase domain-containing protein. (207 aa)
	T265_16037	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (176 aa)
	T265_02978	Protein kinase domain-containing protein. (1129 aa)
	T265_15562	Uncharacterized protein. (493 aa)
	T265_12690	Uncharacterized protein. (790 aa)
	T265_15010	Protein kinase domain-containing protein. (563 aa)
	T265_00470	Ubiquitin-like domain-containing protein. (197 aa)
	T265_00952	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (507 aa)
	T265_12680	Uncharacterized protein. (501 aa)
	T265_09663	Protein kinase domain-containing protein. (340 aa)
	T265_02156	Uncharacterized protein. (435 aa)
	T265_14458	Uncharacterized protein. (521 aa)
	T265_00866	Uncharacterized protein. (528 aa)
	T265_07360	Uncharacterized protein. (456 aa)
	T265_01309	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (412 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00470	T265_02156	A0A075A368	A0A075A7P4	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.430
T265_00470	T265_05597	A0A075A368	A0A074ZJY3	Ubiquitin-like domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.943
T265_00470	T265_06651	A0A075A368	A0A074ZRP4	Ubiquitin-like domain-containing protein.	Protein kinase domain-containing protein.	0.696
T265_00470	T265_07360	A0A075A368	A0A075ABW4	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.996
T265_00470	T265_07767	A0A075A368	A0A074ZMN9	Ubiquitin-like domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.956
T265_00470	T265_07863	A0A075A368	A0A074ZFT3	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.999
T265_00470	T265_08049	A0A075A368	A0A074ZF50	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.430
T265_00470	T265_08050	A0A075A368	A0A074ZAW5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.430
T265_00470	T265_09096	A0A075A368	A0A074Z6S3	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.997
T265_00470	T265_09555	A0A075A368	A0A074Z5I6	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.446
T265_00470	T265_09614	A0A075A368	A0A074Z599	Ubiquitin-like domain-containing protein.	SER_THR_PHOSPHATASE domain-containing protein.	0.644
T265_00470	T265_12680	A0A075A368	A0A075A443	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.430
T265_00470	T265_12690	A0A075A368	A0A075A170	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.566
T265_00470	T265_13821	A0A075A368	A0A074ZNJ3	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.943
T265_00470	T265_14458	A0A075A368	A0A075A9S4	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.430
T265_00470	T265_15562	A0A075A368	A0A074ZW11	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.430
T265_00866	T265_06651	A0A075ABI8	A0A074ZRP4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.581
T265_00866	T265_09096	A0A075ABI8	A0A074Z6S3	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.823
T265_00952	T265_07440	A0A075A440	A0A074ZCY9	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.404
T265_00952	T265_07863	A0A075A440	A0A074ZFT3	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Ubiquitin-like domain-containing protein.	0.440