69 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_01476	Dynein light chain. (178 aa)
	T265_02212	Uncharacterized protein. (114 aa)
	T265_01533	Dynein light chain. (86 aa)
	T265_12454	Uncharacterized protein. (1304 aa)
	T265_14337	Importin N-terminal domain-containing protein. (1066 aa)
	T265_05143	Uncharacterized protein. (536 aa)
	T265_05422	Uncharacterized protein. (2193 aa)
	T265_05375	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (205 aa)
	T265_00723	Uncharacterized protein. (820 aa)
	T265_02792	Uncharacterized protein. (1619 aa)
	T265_13041	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (401 aa)
	T265_01475	Dynein light chain. (89 aa)
	T265_12809	Dynein light chain. (89 aa)
	T265_01534	Dynein light chain. (89 aa)
	T265_07666	ANAPC4_WD40 domain-containing protein. (554 aa)
	T265_14035	WD_REPEATS_REGION domain-containing protein. (188 aa)
	T265_13695	TPR_REGION domain-containing protein. (775 aa)
	T265_13646	Uncharacterized protein. (714 aa)
	T265_13602	Rod_C domain-containing protein. (2308 aa)
	T265_00163	Uncharacterized protein. (2365 aa)
	T265_03325	Peptidase S59 domain-containing protein. (2304 aa)
	T265_10154	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (904 aa)
	T265_15099	WD_REPEATS_REGION domain-containing protein. (635 aa)
	T265_12690	Uncharacterized protein. (790 aa)
	T265_00994	NUDE_C domain-containing protein. (276 aa)
	T265_12815	Dynein light chain. (89 aa)
	T265_05440	Uncharacterized protein. (523 aa)
	T265_05477	Uncharacterized protein. (845 aa)
	T265_07057	Uncharacterized protein. (202 aa)
	T265_06070	TPR_REGION domain-containing protein. (758 aa)
	T265_14131	Uncharacterized protein. (788 aa)
	T265_11097	Dynein light chain. (91 aa)
	T265_09776	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. Belongs to the WD repeat LIS1/nudF family. (410 aa)
	T265_09614	SER_THR_PHOSPHATASE domain-containing protein. (92 aa)
	T265_09555	Uncharacterized protein. (1102 aa)
	T265_14856	Uncharacterized protein. (770 aa)
	T265_09418	HORMA domain protein. (202 aa)
	T265_09389	CULLIN_2 domain-containing protein. (1718 aa)
	T265_09253	Uncharacterized protein. (1791 aa)
	T265_09040	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (579 aa)
	T265_15569	Dynein light chain. (89 aa)
	T265_08517	Uncharacterized protein. (913 aa)
	T265_07616	Uncharacterized protein. (147 aa)
	T265_11849	Dynein light chain. (101 aa)
	T265_10735	Uncharacterized protein. (1869 aa)
	T265_15570	Dynein light chain. (97 aa)
	T265_15127	Uncharacterized protein. (222 aa)
	T265_11337	CS domain-containing protein. (221 aa)
	T265_03205	WD_REPEATS_REGION domain-containing protein. (769 aa)
	T265_01531	Dynein light chain. (89 aa)
	T265_04684	Dynein light chain. (111 aa)
	T265_01532	Dynein light chain. (87 aa)
	T265_01478	Dynein light chain. (89 aa)
	T265_13075	Uncharacterized protein. (1021 aa)
	T265_01865	Uncharacterized protein. (487 aa)
	T265_02210	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (660 aa)
	T265_15716	Uncharacterized protein. (201 aa)
	T265_13884	Uncharacterized protein. (345 aa)
	T265_04378	Dynein light chain. (91 aa)
	T265_04450	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (301 aa)
	T265_16270	Uncharacterized protein. (59 aa)
	T265_14140	Uncharacterized protein. (1941 aa)
	T265_03805	Uncharacterized protein. (614 aa)
	T265_07056	Uncharacterized protein. (1410 aa)
	T265_04148	Proteasome/cyclosome repeat protein. (2834 aa)
	T265_04448	Uncharacterized protein. (242 aa)
	T265_05701	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (682 aa)
	T265_04491	WD_REPEATS_REGION domain-containing protein. (362 aa)
	T265_04868	Uncharacterized protein. (1180 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00163	T265_00994	A0A075A3S2	A0A075A062	Uncharacterized protein.	NUDE_C domain-containing protein.	0.511
T265_00163	T265_01865	A0A075A3S2	A0A074ZWU2	Uncharacterized protein.	Uncharacterized protein.	0.500
T265_00163	T265_02210	A0A075A3S2	A0A074ZVS4	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.995
T265_00163	T265_02212	A0A075A3S2	A0A075AIG0	Uncharacterized protein.	Uncharacterized protein.	0.995
T265_00163	T265_03325	A0A075A3S2	A0A075A3R3	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.999
T265_00163	T265_04148	A0A075A3S2	A0A074ZP24	Uncharacterized protein.	Proteasome/cyclosome repeat protein.	0.716
T265_00163	T265_04450	A0A075A3S2	A0A074ZSF7	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.701
T265_00163	T265_04491	A0A075A3S2	A0A074ZMV2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.918
T265_00163	T265_05143	A0A075A3S2	A0A074ZKS7	Uncharacterized protein.	Uncharacterized protein.	0.999
T265_00163	T265_05375	A0A075A3S2	A0A074ZK30	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.720
T265_00163	T265_05440	A0A075A3S2	A0A074ZJM8	Uncharacterized protein.	Uncharacterized protein.	0.995
T265_00163	T265_08517	A0A075A3S2	A0A074Z905	Uncharacterized protein.	Uncharacterized protein.	0.999
T265_00163	T265_09253	A0A075A3S2	A0A074Z6L1	Uncharacterized protein.	Uncharacterized protein.	0.999
T265_00163	T265_09418	A0A075A3S2	A0A074Z5W0	Uncharacterized protein.	HORMA domain protein.	0.934
T265_00163	T265_10735	A0A075A3S2	A0A074Z171	Uncharacterized protein.	Uncharacterized protein.	0.935
T265_00163	T265_11337	A0A075A3S2	A0A074Z3C0	Uncharacterized protein.	CS domain-containing protein.	0.906
T265_00163	T265_13041	A0A075A3S2	A0A075A665	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.999
T265_00163	T265_13646	A0A075A3S2	A0A075AFW4	Uncharacterized protein.	Uncharacterized protein.	0.895
T265_00163	T265_14140	A0A075A3S2	A0A074ZR62	Uncharacterized protein.	Uncharacterized protein.	0.999
T265_00163	T265_14337	A0A075A3S2	A0A074ZBW6	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.943