7 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_11834	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1405 aa)
	T265_15640	Uncharacterized protein. (63 aa)
	T265_06196	Uncharacterized protein. (1567 aa)
	T265_02141	Uncharacterized protein. (449 aa)
	T265_14921	Uncharacterized protein. (327 aa)
	T265_03694	Uncharacterized protein. (1798 aa)
	T265_03689	Uncharacterized protein. (645 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_06196	T265_11834	A0A074ZL87	A0A074YXI0	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.967
T265_06196	T265_14921	A0A074ZL87	A0A075A494	Uncharacterized protein.	Uncharacterized protein.	0.663
T265_11834	T265_06196	A0A074YXI0	A0A074ZL87	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.967
T265_11834	T265_14921	A0A074YXI0	A0A075A494	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.697
T265_11834	T265_15640	A0A074YXI0	A0A074YWY8	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.967
T265_14921	T265_06196	A0A075A494	A0A074ZL87	Uncharacterized protein.	Uncharacterized protein.	0.663
T265_14921	T265_11834	A0A075A494	A0A074YXI0	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.697
T265_14921	T265_15640	A0A075A494	A0A074YWY8	Uncharacterized protein.	Uncharacterized protein.	0.663
T265_15640	T265_11834	A0A074YWY8	A0A074YXI0	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.967
T265_15640	T265_14921	A0A074YWY8	A0A075A494	Uncharacterized protein.	Uncharacterized protein.	0.663