59 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_16367	Uncharacterized protein. (85 aa)
	T265_15640	Uncharacterized protein. (63 aa)
	T265_12104	Uncharacterized protein. (1950 aa)
	T265_03554	Histone H2B; Belongs to the histone H2B family. (122 aa)
	T265_12280	Uncharacterized protein. (98 aa)
	T265_12402	Histone H2B; Belongs to the histone H2B family. (64 aa)
	T265_13439	Uncharacterized protein. (883 aa)
	T265_05895	Uncharacterized protein. (89 aa)
	T265_05699	RPOLD domain-containing protein. (640 aa)
	T265_13295	WD domain, G-beta repeat protein. (165 aa)
	T265_02369	Peptidylprolyl isomerase. (769 aa)
	T265_02188	Uncharacterized protein. (295 aa)
	T265_02349	WD_REPEATS_REGION domain-containing protein. (405 aa)
	T265_01693	Uncharacterized protein. (1151 aa)
	T265_01062	Fork-head domain-containing protein. (770 aa)
	T265_10570	Uncharacterized protein. (416 aa)
	T265_10407	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (103 aa)
	T265_00433	Uncharacterized protein. (232 aa)
	T265_10083	TPR_REGION domain-containing protein. (547 aa)
	T265_03433	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (713 aa)
	T265_13195	FMN_red domain-containing protein. (786 aa)
	T265_13175	Uncharacterized protein. (99 aa)
	T265_00529	Uncharacterized protein. (921 aa)
	T265_02348	WD_REPEATS_REGION domain-containing protein. (140 aa)
	T265_08454	Uncharacterized protein. (119 aa)
	T265_07978	Med1 domain-containing protein. (1918 aa)
	T265_13991	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1203 aa)
	T265_05828	Core histone H2A/H2B/H3/H4; Belongs to the histone H2B family. (108 aa)
	T265_05709	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (172 aa)
	T265_05686	Uncharacterized protein. (214 aa)
	T265_12794	RNA_pol_L_2 domain-containing protein. (267 aa)
	T265_00962	ANK_REP_REGION domain-containing protein. (1110 aa)
	T265_00004	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1846 aa)
	T265_00011	Uncharacterized protein. (233 aa)
	T265_14648	RNA polymerase Rpb8. (156 aa)
	T265_08810	Hsp90 protein. (716 aa)
	T265_16138	Uncharacterized protein. (91 aa)
	T265_11049	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (95 aa)
	T265_11018	BHLH domain-containing protein. (1026 aa)
	T265_11575	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (402 aa)
	T265_15522	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (94 aa)
	T265_09750	Histone H2A; Belongs to the histone H2A family. (225 aa)
	T265_09508	ANK_REP_REGION domain-containing protein. (1437 aa)
	T265_09412	Uncharacterized protein. (67 aa)
	T265_14337	Importin N-terminal domain-containing protein. (1066 aa)
	T265_07434	Uncharacterized protein. (145 aa)
	T265_10509	Uncharacterized protein. (967 aa)
	T265_07671	Uncharacterized protein. (2123 aa)
	T265_09542	Kinase domain protein; Belongs to the protein kinase superfamily. (427 aa)
	T265_09179	RPOL4c domain-containing protein. (260 aa)
	T265_08863	Fork-head domain-containing protein. (606 aa)
	T265_06196	Uncharacterized protein. (1567 aa)
	T265_05840	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	T265_13707	Transcription factor TFIID. (265 aa)
	T265_04996	Integrase catalytic domain-containing protein. (972 aa)
	T265_03814	WD_REPEATS_REGION domain-containing protein. (911 aa)
	T265_06717	Kinase domain protein; Belongs to the protein kinase superfamily. (497 aa)
	T265_03614	WD domain, G-beta repeat protein. (167 aa)
	T265_06245	RNA polymerase K / subunit. (136 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00004	T265_00433	A0A075AJW9	A0A075A221	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.969
T265_00004	T265_03554	A0A075AJW9	A0A074YVS2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Histone H2B; Belongs to the histone H2B family.	0.593
T265_00004	T265_04996	A0A075AJW9	A0A074ZQI4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Integrase catalytic domain-containing protein.	0.944
T265_00004	T265_05686	A0A075AJW9	A0A075AEZ5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.413
T265_00004	T265_05699	A0A075AJW9	A0A074ZV44	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.968
T265_00004	T265_05709	A0A075AJW9	A0A075AEX9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.608
T265_00004	T265_05828	A0A075AJW9	A0A075AEU4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Core histone H2A/H2B/H3/H4; Belongs to the histone H2B family.	0.593
T265_00004	T265_05840	A0A075AJW9	A0A074ZML9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.608
T265_00004	T265_06245	A0A075AJW9	A0A074ZT17	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase K / subunit.	0.968
T265_00004	T265_07434	A0A075AJW9	A0A074ZCM7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.946
T265_00004	T265_07978	A0A075AJW9	A0A075A9W7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Med1 domain-containing protein.	0.679
T265_00004	T265_09179	A0A075AJW9	A0A074ZHS0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.968
T265_00004	T265_09412	A0A075AJW9	A0A074ZA99	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.968
T265_00004	T265_09542	A0A075AJW9	A0A074ZGG5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Kinase domain protein; Belongs to the protein kinase superfamily.	0.800
T265_00004	T265_09750	A0A075AJW9	A0A074Z8Z4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Histone H2A; Belongs to the histone H2A family.	0.701
T265_00004	T265_10407	A0A075AJW9	A0A075A1G3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.968
T265_00004	T265_11049	A0A075AJW9	A0A074Z4F0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.608
T265_00004	T265_11575	A0A075AJW9	A0A074YYK2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.800
T265_00004	T265_12402	A0A075AJW9	A0A074YT82	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Histone H2B; Belongs to the histone H2B family.	0.593
T265_00004	T265_12794	A0A075AJW9	A0A075AJ09	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA_pol_L_2 domain-containing protein.	0.968