(11 nodes) KR domain network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_07506	Uncharacterized protein. (420 aa)
	T265_03816	Uncharacterized protein. (368 aa)
	T265_13634	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (306 aa)
	T265_04936	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (306 aa)
	T265_13907	Uncharacterized protein. (282 aa)
	T265_14188	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (355 aa)
	T265_10122	Uncharacterized protein. (177 aa)
	T265_15999	Uncharacterized protein. (106 aa)
	T265_04997	Uncharacterized protein. (324 aa)
	T265_12688	Uncharacterized protein. (399 aa)
	T265_13980	Uncharacterized protein. (274 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_04936	T265_12688	A0A074ZLH3	A0A075AJB6	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.904
T265_04936	T265_13634	A0A074ZLH3	A0A074ZMA6	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.900
T265_10122	T265_13980	A0A074ZEE5	A0A074ZT28	Uncharacterized protein.	Uncharacterized protein.	0.902
T265_12688	T265_04936	A0A075AJB6	A0A074ZLH3	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.904
T265_12688	T265_13634	A0A075AJB6	A0A074ZMA6	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.904
T265_12688	T265_13907	A0A075AJB6	A0A074ZIW2	Uncharacterized protein.	Uncharacterized protein.	0.404
T265_13634	T265_04936	A0A074ZMA6	A0A074ZLH3	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.900
T265_13634	T265_12688	A0A074ZMA6	A0A075AJB6	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.904
T265_13907	T265_12688	A0A074ZIW2	A0A075AJB6	Uncharacterized protein.	Uncharacterized protein.	0.404
T265_13980	T265_10122	A0A074ZT28	A0A074ZEE5	Uncharacterized protein.	Uncharacterized protein.	0.902