(70 nodes) DEAD-like helicases superfamily network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_15689	Helicase ATP-binding domain-containing protein. (874 aa)
	T265_11668	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family. (447 aa)
	T265_11604	Uncharacterized protein; Belongs to the DEAD box helicase family. (720 aa)
	T265_11802	Uncharacterized protein. (1098 aa)
	T265_10398	Uncharacterized protein. (2023 aa)
	T265_10209	Uncharacterized protein. (2407 aa)
	T265_10864	Uncharacterized protein; Belongs to the DEAD box helicase family. (469 aa)
	T265_15662	Helicase ATP-binding domain-containing protein. (304 aa)
	T265_08929	Uncharacterized protein. (1139 aa)
	T265_14685	Uncharacterized protein. (1109 aa)
	T265_08757	RNA helicase. (635 aa)
	T265_09655	Uncharacterized protein. (1246 aa)
	T265_14230	Helicase ATP-binding domain-containing protein. (910 aa)
	T265_07177	Uncharacterized protein. (984 aa)
	T265_14212	Uncharacterized protein. (1618 aa)
	T265_08005	Uncharacterized protein. (1881 aa)
	T265_14961	Uncharacterized protein. (1068 aa)
	T265_06604	Uncharacterized protein. (2022 aa)
	T265_06461	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (849 aa)
	T265_06534	Uncharacterized protein. (1442 aa)
	T265_06510	Helicase protein. (753 aa)
	T265_13855	Uncharacterized protein. (1351 aa)
	T265_13978	Uncharacterized protein. (2777 aa)
	T265_14381	Uncharacterized protein. (1442 aa)
	T265_13481	RNA helicase. (624 aa)
	T265_13782	Uncharacterized protein; Belongs to the DEAD box helicase family. (455 aa)
	T265_04302	Uncharacterized protein. (1170 aa)
	T265_06949	DEAD/DEAH box helicase. (426 aa)
	T265_03520	Uncharacterized protein; Belongs to the DEAD box helicase family. (419 aa)
	T265_03216	Uncharacterized protein. (744 aa)
	T265_03368	Uncharacterized protein. (1670 aa)
	T265_04395	Uncharacterized protein. (894 aa)
	T265_04372	Uncharacterized protein. (4019 aa)
	T265_02840	Uncharacterized protein. (1154 aa)
	T265_11931	Uncharacterized protein; Belongs to the DEAD box helicase family. (740 aa)
	T265_13219	Uncharacterized protein. (397 aa)
	T265_11628	Uncharacterized protein. (1974 aa)
	T265_13167	Uncharacterized protein; Belongs to the DEAD box helicase family. (634 aa)
	T265_05101	Uncharacterized protein; Belongs to the DEAD box helicase family. (626 aa)
	T265_01946	Uncharacterized protein. (491 aa)
	T265_02512	Uncharacterized protein. (2765 aa)
	T265_15315	Uncharacterized protein. (1024 aa)
	T265_12762	Uncharacterized protein. (1330 aa)
	T265_02049	Helicase ATP-binding domain-containing protein. (2081 aa)
	T265_10560	Uncharacterized protein; Belongs to the DEAD box helicase family. (417 aa)
	T265_10537	Uncharacterized protein. (884 aa)
	T265_01921	Uncharacterized protein. (1092 aa)
	T265_13336	Uncharacterized protein. (1859 aa)
	T265_12816	Uncharacterized protein; Belongs to the DEAD box helicase family. (645 aa)
	T265_00612	Uncharacterized protein. (1216 aa)
	T265_00031	Uncharacterized protein. (1393 aa)
	T265_09161	Uncharacterized protein. (964 aa)
	T265_02708	Uncharacterized protein; Belongs to the DEAD box helicase family. (708 aa)
	T265_00335	Uncharacterized protein. (2194 aa)
	T265_09022	Uncharacterized protein. (1284 aa)
	T265_00138	Helicase ATP-binding domain-containing protein. (846 aa)
	T265_12857	Uncharacterized protein. (765 aa)
	T265_01304	Uncharacterized protein; Belongs to the DEAD box helicase family. (664 aa)
	T265_01259	Uncharacterized protein. (991 aa)
	T265_07639	Uncharacterized protein. (2049 aa)
	T265_00289	Uncharacterized protein. (1093 aa)
	T265_00038	Uncharacterized protein. (1729 aa)
	T265_06266	Uncharacterized protein. (997 aa)
	T265_13516	Uncharacterized protein. (1418 aa)
	T265_03304	Uncharacterized protein. (802 aa)
	T265_00769	Uncharacterized protein. (1001 aa)
	T265_12604	Uncharacterized protein. (1267 aa)
	T265_00261	Uncharacterized protein. (931 aa)
	T265_00276	Uncharacterized protein. (1305 aa)
	T265_12454	Uncharacterized protein. (1304 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00031	T265_00038	A0A075A496	A0A075ADF9	Uncharacterized protein.	Uncharacterized protein.	0.409
T265_00031	T265_00138	A0A075A496	A0A075A7E3	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.534
T265_00031	T265_00261	A0A075A496	A0A075AJW4	Uncharacterized protein.	Uncharacterized protein.	0.655
T265_00031	T265_02708	A0A075A496	A0A075A5Y3	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.411
T265_00031	T265_02840	A0A075A496	A0A074ZUK6	Uncharacterized protein.	Uncharacterized protein.	0.411
T265_00031	T265_03216	A0A075A496	A0A074ZSI2	Uncharacterized protein.	Uncharacterized protein.	0.411
T265_00031	T265_04372	A0A075A496	A0A074ZSU6	Uncharacterized protein.	Uncharacterized protein.	0.420
T265_00031	T265_06534	A0A075A496	A0A074ZG74	Uncharacterized protein.	Uncharacterized protein.	0.747
T265_00031	T265_09161	A0A075A496	A0A075A5V6	Uncharacterized protein.	Uncharacterized protein.	0.452
T265_00031	T265_09655	A0A075A496	A0A074Z9F6	Uncharacterized protein.	Uncharacterized protein.	0.409
T265_00031	T265_10398	A0A075A496	A0A074Z2P7	Uncharacterized protein.	Uncharacterized protein.	0.497
T265_00031	T265_10560	A0A075A496	A0A075A0V4	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.411
T265_00031	T265_12454	A0A075A496	A0A075AJZ5	Uncharacterized protein.	Uncharacterized protein.	0.502
T265_00031	T265_13336	A0A075A496	A0A075A252	Uncharacterized protein.	Uncharacterized protein.	0.497
T265_00031	T265_13978	A0A075A496	A0A074ZL61	Uncharacterized protein.	Uncharacterized protein.	0.497
T265_00031	T265_14381	A0A075A496	A0A074ZMJ9	Uncharacterized protein.	Uncharacterized protein.	0.591
T265_00038	T265_00031	A0A075ADF9	A0A075A496	Uncharacterized protein.	Uncharacterized protein.	0.409
T265_00038	T265_00261	A0A075ADF9	A0A075AJW4	Uncharacterized protein.	Uncharacterized protein.	0.426
T265_00038	T265_00276	A0A075ADF9	A0A075AJW7	Uncharacterized protein.	Uncharacterized protein.	0.444
T265_00038	T265_00769	A0A075ADF9	A0A075AJE8	Uncharacterized protein.	Uncharacterized protein.	0.601