26 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_12104	Uncharacterized protein. (1950 aa)
	T265_11722	Uncharacterized protein. (204 aa)
	T265_11747	Protein kinase domain-containing protein. (326 aa)
	T265_11493	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (1204 aa)
	T265_15075	Uncharacterized protein. (799 aa)
	T265_09555	Uncharacterized protein. (1102 aa)
	T265_10582	Uncharacterized protein. (808 aa)
	T265_15166	Uncharacterized protein. (398 aa)
	T265_09132	Uncharacterized protein. (192 aa)
	T265_10340	Uncharacterized protein. (215 aa)
	T265_08991	Uncharacterized protein. (175 aa)
	T265_09252	E2F_TDP domain-containing protein. (296 aa)
	T265_11013	Mothers against decapentaplegic homolog. (790 aa)
	T265_14719	Uncharacterized protein. (183 aa)
	T265_07671	Uncharacterized protein. (2123 aa)
	T265_04778	Noggin. (456 aa)
	T265_04520	Uncharacterized protein. (239 aa)
	T265_13998	Protein kinase domain-containing protein. (207 aa)
	T265_16037	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (176 aa)
	T265_02579	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (619 aa)
	T265_12690	Uncharacterized protein. (790 aa)
	T265_03790	Uncharacterized protein. (1181 aa)
	T265_12515	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (1004 aa)
	T265_12512	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (656 aa)
	T265_01309	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (412 aa)
	T265_12673	DUF3480 domain-containing protein. (910 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_01309	T265_04520	A0A075AJ20	A0A074ZMX6	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.424
T265_01309	T265_08991	A0A075AJ20	A0A074Z782	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.446
T265_01309	T265_09132	A0A075AJ20	A0A074Z6P2	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.446
T265_01309	T265_10340	A0A075AJ20	A0A074Z6W5	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.446
T265_01309	T265_11013	A0A075AJ20	A0A074ZB42	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Mothers against decapentaplegic homolog.	0.431
T265_01309	T265_11747	A0A075AJ20	A0A074Z1W3	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Protein kinase domain-containing protein.	0.409
T265_01309	T265_12690	A0A075AJ20	A0A075A170	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.432
T265_01309	T265_13998	A0A075AJ20	A0A074ZSR0	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Protein kinase domain-containing protein.	0.901
T265_01309	T265_14719	A0A075AJ20	A0A074ZBR7	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.446
T265_01309	T265_16037	A0A075AJ20	A0A074ZT75	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.901
T265_02579	T265_08991	A0A074ZUK3	A0A074Z782	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Uncharacterized protein.	0.424
T265_02579	T265_09132	A0A074ZUK3	A0A074Z6P2	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Uncharacterized protein.	0.424
T265_02579	T265_10340	A0A074ZUK3	A0A074Z6W5	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Uncharacterized protein.	0.424
T265_02579	T265_11013	A0A074ZUK3	A0A074ZB42	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Mothers against decapentaplegic homolog.	0.691
T265_02579	T265_11493	A0A074ZUK3	A0A074Z2T4	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.872
T265_02579	T265_12512	A0A074ZUK3	A0A075ACV8	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.905
T265_02579	T265_12673	A0A074ZUK3	A0A075AJA3	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	DUF3480 domain-containing protein.	0.514
T265_02579	T265_14719	A0A074ZUK3	A0A074ZBR7	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Uncharacterized protein.	0.424
T265_03790	T265_09252	A0A075A225	A0A074ZAY8	Uncharacterized protein.	E2F_TDP domain-containing protein.	0.999
T265_03790	T265_09555	A0A075A225	A0A074Z5I6	Uncharacterized protein.	Uncharacterized protein.	0.439