(86 nodes) Transport of the SLBP independent Mature mRNA network (Hucho hucho)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSHHUP00000000209	Uncharacterized protein. (82 aa)
	ENSHHUP00000000216	Uncharacterized protein. (132 aa)
	ENSHHUP00000000656	Uncharacterized protein. (58 aa)
	ENSHHUP00000002557	Uncharacterized protein. (158 aa)
	ENSHHUP00000003941	Nucleoporin 88. (718 aa)
	ENSHHUP00000008797	Nucleoporin 58. (610 aa)
	ENSHHUP00000010526	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (922 aa)
	ENSHHUP00000012859	Nup214_FG domain-containing protein. (2021 aa)
	ENSHHUP00000013162	RanBD1 domain-containing protein. (94 aa)
	ENSHHUP00000013331	Uncharacterized protein. (284 aa)
	ENSHHUP00000013335	Uncharacterized protein. (144 aa)
	ENSHHUP00000013338	Uncharacterized protein. (174 aa)
	ENSHHUP00000013343	BIG2 domain-containing protein. (800 aa)
	NUP85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (651 aa)
	ENSHHUP00000015278	Nup153 domain-containing protein. (196 aa)
	ENSHHUP00000016539	Uncharacterized protein. (97 aa)
	NUP85-2	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (688 aa)
	ENSHHUP00000018542	Uncharacterized protein. (167 aa)
	ENSHHUP00000020233	Uncharacterized protein. (197 aa)
	ENSHHUP00000020237	RanBP2-type domain-containing protein. (96 aa)
	ENSHHUP00000020238	Nup153 domain-containing protein. (291 aa)
	ENSHHUP00000020242	Nup153 domain-containing protein. (270 aa)
	ENSHHUP00000020733	RAN binding protein 2. (3168 aa)
	ENSHHUP00000021025	Zgc:153681. (660 aa)
	ENSHHUP00000021939	Uncharacterized protein. (135 aa)
	ENSHHUP00000023887	annotation not available (94 aa)
	ENSHHUP00000024760	Uncharacterized protein. (143 aa)
	ENSHHUP00000024888	Nucleoporin 160. (1391 aa)
	ENSHHUP00000025480	Nuclear transport factor 2-like export factor 2. (146 aa)
	ENSHHUP00000025509	Uncharacterized protein. (86 aa)
	ENSHHUP00000025604	annotation not available (86 aa)
	ENSHHUP00000026079	Uncharacterized protein. (60 aa)
	ENSHHUP00000026138	Uncharacterized protein. (254 aa)
	ENSHHUP00000026585	Nucleoporin 153. (1436 aa)
	ENSHHUP00000026653	Nucleoporin 98. (1821 aa)
	ENSHHUP00000027077	RRM Nup35-type domain-containing protein. (181 aa)
	ENSHHUP00000027380	Nsp1_C domain-containing protein. (572 aa)
	ENSHHUP00000030391	Nsp1_C domain-containing protein. (573 aa)
	ENSHHUP00000030934	Uncharacterized protein. (2523 aa)
	ENSHHUP00000030995	Uncharacterized protein. (441 aa)
	ENSHHUP00000031492	Nucleoporin 37. (326 aa)
	ENSHHUP00000032598	Nucleoporin 155. (1391 aa)
	ENSHHUP00000032979	Achalasia, adrenocortical insufficiency, alacrimia. (410 aa)
	ENSHHUP00000039898	Uncharacterized protein. (102 aa)
	ENSHHUP00000040876	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (307 aa)
	ENSHHUP00000041387	Nuclear RNA export factor 1. (633 aa)
	ENSHHUP00000042009	Nucleoporin 43. (372 aa)
	ENSHHUP00000042314	Nucleoporin 43. (372 aa)
	ENSHHUP00000042499	Nucleoporin 210. (1891 aa)
	ENSHHUP00000048560	Nucleoporin 98. (1802 aa)
	ENSHHUP00000049027	Uncharacterized protein. (131 aa)
	ENSHHUP00000049043	Uncharacterized protein. (229 aa)
	ENSHHUP00000050675	Ribonucleic acid export 1. (387 aa)
	ENSHHUP00000050929	TPR_MLP1_2 domain-containing protein. (2083 aa)
	ENSHHUP00000052127	Achalasia, adrenocortical insufficiency, alacrimia. (513 aa)
	ENSHHUP00000052732	Nuclear transport factor 2-like export factor 2. (148 aa)
	ENSHHUP00000053038	Nucleoporin 88. (720 aa)
	ENSHHUP00000056252	RRM domain-containing protein. (273 aa)
	ENSHHUP00000056374	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (925 aa)
	ENSHHUP00000061529	Translocated promoter region b, nuclear basket protein. (2163 aa)
	ENSHHUP00000061636	Uncharacterized protein. (118 aa)
	ENSHHUP00000062332	Uncharacterized protein. (192 aa)
	ENSHHUP00000066467	WD_REPEATS_REGION domain-containing protein. (310 aa)
	ENSHHUP00000066884	Nucleoporin 133. (1149 aa)
	ENSHHUP00000067434	Uncharacterized protein. (96 aa)
	ENSHHUP00000067949	Uncharacterized protein. (1321 aa)
	ENSHHUP00000068328	Uncharacterized protein. (119 aa)
	NUP54	Nucleoporin 54. (602 aa)
	ENSHHUP00000072174	Uncharacterized protein. (131 aa)
	ENSHHUP00000072906	Uncharacterized protein. (389 aa)
	ENSHHUP00000074328	Nucleoporin 210. (1882 aa)
	ENSHHUP00000078047	AT hook containing transcription factor 1. (2509 aa)
	ENSHHUP00000078589	GLE1 RNA export mediator homolog (yeast). (722 aa)
	ENSHHUP00000079155	Si:ch211-216l23.2. (428 aa)
	ENSHHUP00000080590	Nup214_FG domain-containing protein. (2011 aa)
	ENSHHUP00000081486	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	ENSHHUP00000082710	Nuclear RNA export factor 1. (633 aa)
	ENSHHUP00000083292	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (278 aa)
	ENSHHUP00000085040	Nucleoporin 205. (1986 aa)
	ENSHHUP00000088328	ELYS domain-containing protein. (803 aa)
	ENSHHUP00000088360	Nuclear receptor coactivator 5. (661 aa)
	ENSHHUP00000088425	Nucleoporin 188. (1728 aa)
	ENSHHUP00000089208	Translocated promoter region a, nuclear basket protein. (2174 aa)
	NUP160	Nucleoporin 160. (1243 aa)
	ENSHHUP00000091027	Nucleoporin 133. (1142 aa)
	ENSHHUP00000091475	Uncharacterized protein. (2832 aa)

Your Current Organism:

Hucho hucho

NCBI taxonomy Id: 62062
Other names: H. hucho, Hucho hucho hucho, huchen

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHHUP00000000209	ENSHHUP00000000216	ENSHHUP00000000209	ENSHHUP00000000216	Uncharacterized protein.	Uncharacterized protein.	0.504
ENSHHUP00000000209	ENSHHUP00000000656	ENSHHUP00000000209	ENSHHUP00000000656	Uncharacterized protein.	Uncharacterized protein.	0.963
ENSHHUP00000000209	ENSHHUP00000002557	ENSHHUP00000000209	ENSHHUP00000002557	Uncharacterized protein.	Uncharacterized protein.	0.971
ENSHHUP00000000209	ENSHHUP00000003941	ENSHHUP00000000209	ENSHHUP00000003941	Uncharacterized protein.	Nucleoporin 88.	0.978
ENSHHUP00000000209	ENSHHUP00000008797	ENSHHUP00000000209	ENSHHUP00000008797	Uncharacterized protein.	Nucleoporin 58.	0.971
ENSHHUP00000000209	ENSHHUP00000010526	ENSHHUP00000000209	ENSHHUP00000010526	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.998
ENSHHUP00000000209	ENSHHUP00000012859	ENSHHUP00000000209	ENSHHUP00000012859	Uncharacterized protein.	Nup214_FG domain-containing protein.	0.989
ENSHHUP00000000209	ENSHHUP00000013162	ENSHHUP00000000209	ENSHHUP00000013162	Uncharacterized protein.	RanBD1 domain-containing protein.	0.828
ENSHHUP00000000209	ENSHHUP00000013331	ENSHHUP00000000209	ENSHHUP00000013331	Uncharacterized protein.	Uncharacterized protein.	0.889
ENSHHUP00000000209	ENSHHUP00000013335	ENSHHUP00000000209	ENSHHUP00000013335	Uncharacterized protein.	Uncharacterized protein.	0.889
ENSHHUP00000000209	ENSHHUP00000013338	ENSHHUP00000000209	ENSHHUP00000013338	Uncharacterized protein.	Uncharacterized protein.	0.889
ENSHHUP00000000209	ENSHHUP00000013343	ENSHHUP00000000209	ENSHHUP00000013343	Uncharacterized protein.	BIG2 domain-containing protein.	0.889
ENSHHUP00000000209	ENSHHUP00000015278	ENSHHUP00000000209	ENSHHUP00000015278	Uncharacterized protein.	Nup153 domain-containing protein.	0.950
ENSHHUP00000000209	ENSHHUP00000016539	ENSHHUP00000000209	ENSHHUP00000016539	Uncharacterized protein.	Uncharacterized protein.	0.971
ENSHHUP00000000209	ENSHHUP00000018542	ENSHHUP00000000209	ENSHHUP00000018542	Uncharacterized protein.	Uncharacterized protein.	0.971
ENSHHUP00000000209	ENSHHUP00000020233	ENSHHUP00000000209	ENSHHUP00000020233	Uncharacterized protein.	Uncharacterized protein.	0.950
ENSHHUP00000000209	ENSHHUP00000020237	ENSHHUP00000000209	ENSHHUP00000020237	Uncharacterized protein.	RanBP2-type domain-containing protein.	0.950
ENSHHUP00000000209	ENSHHUP00000020238	ENSHHUP00000000209	ENSHHUP00000020238	Uncharacterized protein.	Nup153 domain-containing protein.	0.950
ENSHHUP00000000209	ENSHHUP00000020242	ENSHHUP00000000209	ENSHHUP00000020242	Uncharacterized protein.	Nup153 domain-containing protein.	0.950
ENSHHUP00000000209	ENSHHUP00000020733	ENSHHUP00000000209	ENSHHUP00000020733	Uncharacterized protein.	RAN binding protein 2.	0.999