(6 nodes) Mixed, incl. Nuclear RNA export factor complex, and Nucleoprotein TPR/MLP1 network (Hucho hucho)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSHHUP00000020238	Nup153 domain-containing protein. (291 aa)
	ENSHHUP00000021939	Uncharacterized protein. (135 aa)
	ENSHHUP00000050929	TPR_MLP1_2 domain-containing protein. (2083 aa)
	ENSHHUP00000052732	Nuclear transport factor 2-like export factor 2. (148 aa)
	ENSHHUP00000072906	Uncharacterized protein. (389 aa)
	ENSHHUP00000082710	Nuclear RNA export factor 1. (633 aa)

Your Current Organism:

Hucho hucho

NCBI taxonomy Id: 62062
Other names: H. hucho, Hucho hucho hucho, huchen

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSHHUP00000020238	ENSHHUP00000021939	Nup153 domain-containing protein.	Uncharacterized protein.	0.881
ENSHHUP00000020238	ENSHHUP00000050929	Nup153 domain-containing protein.	TPR_MLP1_2 domain-containing protein.	0.885
ENSHHUP00000020238	ENSHHUP00000052732	Nup153 domain-containing protein.	Nuclear transport factor 2-like export factor 2.	0.649
ENSHHUP00000020238	ENSHHUP00000072906	Nup153 domain-containing protein.	Uncharacterized protein.	0.884
ENSHHUP00000020238	ENSHHUP00000082710	Nup153 domain-containing protein.	Nuclear RNA export factor 1.	0.930
ENSHHUP00000021939	ENSHHUP00000020238	Uncharacterized protein.	Nup153 domain-containing protein.	0.881
ENSHHUP00000021939	ENSHHUP00000050929	Uncharacterized protein.	TPR_MLP1_2 domain-containing protein.	0.845
ENSHHUP00000021939	ENSHHUP00000052732	Uncharacterized protein.	Nuclear transport factor 2-like export factor 2.	0.704
ENSHHUP00000021939	ENSHHUP00000072906	Uncharacterized protein.	Uncharacterized protein.	0.976
ENSHHUP00000021939	ENSHHUP00000082710	Uncharacterized protein.	Nuclear RNA export factor 1.	0.934
ENSHHUP00000050929	ENSHHUP00000020238	TPR_MLP1_2 domain-containing protein.	Nup153 domain-containing protein.	0.885
ENSHHUP00000050929	ENSHHUP00000021939	TPR_MLP1_2 domain-containing protein.	Uncharacterized protein.	0.845
ENSHHUP00000050929	ENSHHUP00000052732	TPR_MLP1_2 domain-containing protein.	Nuclear transport factor 2-like export factor 2.	0.657
ENSHHUP00000050929	ENSHHUP00000072906	TPR_MLP1_2 domain-containing protein.	Uncharacterized protein.	0.836
ENSHHUP00000050929	ENSHHUP00000082710	TPR_MLP1_2 domain-containing protein.	Nuclear RNA export factor 1.	0.935
ENSHHUP00000052732	ENSHHUP00000020238	Nuclear transport factor 2-like export factor 2.	Nup153 domain-containing protein.	0.649
ENSHHUP00000052732	ENSHHUP00000021939	Nuclear transport factor 2-like export factor 2.	Uncharacterized protein.	0.704
ENSHHUP00000052732	ENSHHUP00000050929	Nuclear transport factor 2-like export factor 2.	TPR_MLP1_2 domain-containing protein.	0.657
ENSHHUP00000052732	ENSHHUP00000072906	Nuclear transport factor 2-like export factor 2.	Uncharacterized protein.	0.846
ENSHHUP00000052732	ENSHHUP00000082710	Nuclear transport factor 2-like export factor 2.	Nuclear RNA export factor 1.	0.995