(5 nodes) Golgi 4-transmembrane spanning transporter network (Hucho hucho)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSHHUP00000004421	Uncharacterized protein. (113 aa)
	LAPTM4A	Lysosomal protein transmembrane 4 alpha. (291 aa)
	ENSHHUP00000040550	Lysosomal protein transmembrane 4 alpha. (245 aa)
	ENSHHUP00000064996	Lysosomal protein transmembrane 4 beta. (247 aa)
	ENSHHUP00000074962	Lysosomal protein transmembrane 4 beta. (243 aa)

Your Current Organism:

Hucho hucho

NCBI taxonomy Id: 62062
Other names: H. hucho, Hucho hucho hucho, huchen

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHHUP00000040550	ENSHHUP00000064996	ENSHHUP00000040550	ENSHHUP00000064996	Lysosomal protein transmembrane 4 alpha.	Lysosomal protein transmembrane 4 beta.	0.848
ENSHHUP00000040550	ENSHHUP00000074962	ENSHHUP00000040550	ENSHHUP00000074962	Lysosomal protein transmembrane 4 alpha.	Lysosomal protein transmembrane 4 beta.	0.848
ENSHHUP00000064996	ENSHHUP00000040550	ENSHHUP00000064996	ENSHHUP00000040550	Lysosomal protein transmembrane 4 beta.	Lysosomal protein transmembrane 4 alpha.	0.848
ENSHHUP00000064996	LAPTM4A	ENSHHUP00000064996	ENSHHUP00000039509	Lysosomal protein transmembrane 4 beta.	Lysosomal protein transmembrane 4 alpha.	0.848
ENSHHUP00000074962	ENSHHUP00000040550	ENSHHUP00000074962	ENSHHUP00000040550	Lysosomal protein transmembrane 4 beta.	Lysosomal protein transmembrane 4 alpha.	0.848
ENSHHUP00000074962	LAPTM4A	ENSHHUP00000074962	ENSHHUP00000039509	Lysosomal protein transmembrane 4 beta.	Lysosomal protein transmembrane 4 alpha.	0.847
LAPTM4A	ENSHHUP00000064996	ENSHHUP00000039509	ENSHHUP00000064996	Lysosomal protein transmembrane 4 alpha.	Lysosomal protein transmembrane 4 beta.	0.848
LAPTM4A	ENSHHUP00000074962	ENSHHUP00000039509	ENSHHUP00000074962	Lysosomal protein transmembrane 4 alpha.	Lysosomal protein transmembrane 4 beta.	0.847