31 items (Hucho hucho) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSHHUP00000053334	Uncharacterized protein. (864 aa)
	ENSHHUP00000052505	Pre-mRNA processing factor 8. (2338 aa)
	ENSHHUP00000006451	MPN domain-containing protein. (319 aa)
	ENSHHUP00000016998	NPL4 homolog, ubiquitin recognition factor. (627 aa)
	EIF3F	Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (308 aa)
	ENSHHUP00000026547	Pre-mRNA processing factor 8. (2338 aa)
	ABRAXAS2	Abraxas 2, BRISC complex subunit. (446 aa)
	ENSHHUP00000079668	MPN domain containing. (469 aa)
	ENSHHUP00000073217	BRCA1/BRCA2-containing complex, subunit 3. (260 aa)
	ENSHHUP00000071660	Proteasome 26S subunit, non-ATPase 14. (337 aa)
	PSMD7	Proteasome 26S subunit, non-ATPase 7. (325 aa)
	ENSHHUP00000076654	ER membrane protein complex subunit 8. (206 aa)
	EIF3F-2	Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (316 aa)
	ENSHHUP00000075231	COP9 signalosome subunit 5. (336 aa)
	STAMBP	STAM binding protein. (317 aa)
	ENSHHUP00000066776	Abraxas 1, BRCA1 A complex subunit. (404 aa)
	ENSHHUP00000060934	ER membrane protein complex subunit 8. (204 aa)
	ENSHHUP00000055550	Myb-like, SWIRM and MPN domains 1. (883 aa)
	ENSHHUP00000074892	MPN domain-containing protein. (254 aa)
	ENSHHUP00000037216	NPL4 homolog, ubiquitin recognition factor. (622 aa)
	ENSHHUP00000080537	Proteasome 26S subunit, non-ATPase 14. (310 aa)
	ENSHHUP00000079806	Abraxas 2, BRISC complex subunit. (444 aa)
	ENSHHUP00000006922	MPN domain-containing protein. (359 aa)
	ENSHHUP00000079743	STAM binding protein-like 1. (419 aa)
	ENSHHUP00000089403	MPN domain-containing protein. (274 aa)
	ENSHHUP00000043003	COP9 signalosome subunit 5. (334 aa)
	ENSHHUP00000042777	ER membrane protein complex subunit 9. (205 aa)
	ENSHHUP00000040678	BRCA1/BRCA2-containing complex, subunit 3. (260 aa)
	COPS6	COP9 signalosome subunit 6. (327 aa)
	ENSHHUP00000039449	STAM binding protein-like 1. (437 aa)
	ENSHHUP00000038492	Proteasome 26S subunit, non-ATPase 7. (358 aa)

Your Current Organism:

Hucho hucho

NCBI taxonomy Id: 62062
Other names: H. hucho, Hucho hucho hucho, huchen

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABRAXAS2	ENSHHUP00000040678	ENSHHUP00000026859	ENSHHUP00000040678	Abraxas 2, BRISC complex subunit.	BRCA1/BRCA2-containing complex, subunit 3.	0.994
ABRAXAS2	ENSHHUP00000053334	ENSHHUP00000026859	ENSHHUP00000053334	Abraxas 2, BRISC complex subunit.	Uncharacterized protein.	0.485
ABRAXAS2	ENSHHUP00000055550	ENSHHUP00000026859	ENSHHUP00000055550	Abraxas 2, BRISC complex subunit.	Myb-like, SWIRM and MPN domains 1.	0.485
ABRAXAS2	ENSHHUP00000071660	ENSHHUP00000026859	ENSHHUP00000071660	Abraxas 2, BRISC complex subunit.	Proteasome 26S subunit, non-ATPase 14.	0.549
ABRAXAS2	ENSHHUP00000073217	ENSHHUP00000026859	ENSHHUP00000073217	Abraxas 2, BRISC complex subunit.	BRCA1/BRCA2-containing complex, subunit 3.	0.994
ABRAXAS2	ENSHHUP00000079668	ENSHHUP00000026859	ENSHHUP00000079668	Abraxas 2, BRISC complex subunit.	MPN domain containing.	0.439
ABRAXAS2	ENSHHUP00000080537	ENSHHUP00000026859	ENSHHUP00000080537	Abraxas 2, BRISC complex subunit.	Proteasome 26S subunit, non-ATPase 14.	0.549
COPS6	EIF3F	ENSHHUP00000040055	ENSHHUP00000025883	COP9 signalosome subunit 6.	Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.435
COPS6	EIF3F-2	ENSHHUP00000040055	ENSHHUP00000083750	COP9 signalosome subunit 6.	Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.435
COPS6	ENSHHUP00000006451	ENSHHUP00000040055	ENSHHUP00000006451	COP9 signalosome subunit 6.	MPN domain-containing protein.	0.429
COPS6	ENSHHUP00000006922	ENSHHUP00000040055	ENSHHUP00000006922	COP9 signalosome subunit 6.	MPN domain-containing protein.	0.429
COPS6	ENSHHUP00000016998	ENSHHUP00000040055	ENSHHUP00000016998	COP9 signalosome subunit 6.	NPL4 homolog, ubiquitin recognition factor.	0.403
COPS6	ENSHHUP00000037216	ENSHHUP00000040055	ENSHHUP00000037216	COP9 signalosome subunit 6.	NPL4 homolog, ubiquitin recognition factor.	0.403
COPS6	ENSHHUP00000038492	ENSHHUP00000040055	ENSHHUP00000038492	COP9 signalosome subunit 6.	Proteasome 26S subunit, non-ATPase 7.	0.429
COPS6	ENSHHUP00000043003	ENSHHUP00000040055	ENSHHUP00000043003	COP9 signalosome subunit 6.	COP9 signalosome subunit 5.	0.995
COPS6	ENSHHUP00000053334	ENSHHUP00000040055	ENSHHUP00000053334	COP9 signalosome subunit 6.	Uncharacterized protein.	0.546
COPS6	ENSHHUP00000055550	ENSHHUP00000040055	ENSHHUP00000055550	COP9 signalosome subunit 6.	Myb-like, SWIRM and MPN domains 1.	0.546
COPS6	ENSHHUP00000071660	ENSHHUP00000040055	ENSHHUP00000071660	COP9 signalosome subunit 6.	Proteasome 26S subunit, non-ATPase 14.	0.550
COPS6	ENSHHUP00000075231	ENSHHUP00000040055	ENSHHUP00000075231	COP9 signalosome subunit 6.	COP9 signalosome subunit 5.	0.995
COPS6	ENSHHUP00000079668	ENSHHUP00000040055	ENSHHUP00000079668	COP9 signalosome subunit 6.	MPN domain containing.	0.469