17 items (Hymenolepis diminuta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A158QG84	Uncharacterized protein. (2903 aa)
	HDID_LOCUS681	Uncharacterized protein. (205 aa)
	HDID_LOCUS3400	Uncharacterized protein. (256 aa)
	HDID_LOCUS3796	Uncharacterized protein. (2352 aa)
	HDID_LOCUS4701	Serine/threonine-protein phosphatase. (282 aa)
	HDID_LOCUS6271	RYDR_ITPR domain-containing protein. (249 aa)
	HDID_LOCUS7070	Uncharacterized protein. (184 aa)
	HDID_LOCUS7809	Uncharacterized protein. (169 aa)
	HDID_LOCUS8745	Uncharacterized protein. (247 aa)
	HDID_LOCUS8839	Uncharacterized protein. (240 aa)
	HDID_LOCUS9659	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (190 aa)
	HDID_LOCUS1495	Uncharacterized protein. (1522 aa)
	HDID_LOCUS1682	RHD domain-containing protein. (1030 aa)
	HDID_LOCUS3139	PKD_channel domain-containing protein. (635 aa)
	HDID_LOCUS7141	PHD-type domain-containing protein. (1020 aa)
	HDID_LOCUS7619	PDZ domain-containing protein. (1354 aa)
	HDID_LOCUS9628	ANK_REP_REGION domain-containing protein. (1605 aa)

Your Current Organism:

Hymenolepis diminuta

NCBI taxonomy Id: 6216
Other names: H. diminuta, rat tapeworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A158QG84	HDID_LOCUS6271	A0A158QG84	A0A0R3SMV8	Uncharacterized protein.	RYDR_ITPR domain-containing protein.	0.940
A0A158QG84	HDID_LOCUS7070	A0A158QG84	A0A0R3SPX7	Uncharacterized protein.	Uncharacterized protein.	0.929
A0A158QG84	HDID_LOCUS7809	A0A158QG84	A0A0R3SRK3	Uncharacterized protein.	Uncharacterized protein.	0.405
HDID_LOCUS1495	HDID_LOCUS3139	A0A158QCG8	A0A158QDJ4	Uncharacterized protein.	PKD_channel domain-containing protein.	0.700
HDID_LOCUS1495	HDID_LOCUS9628	A0A158QCG8	A0A158QFW9	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.639
HDID_LOCUS3139	HDID_LOCUS1495	A0A158QDJ4	A0A158QCG8	PKD_channel domain-containing protein.	Uncharacterized protein.	0.700
HDID_LOCUS3139	HDID_LOCUS9628	A0A158QDJ4	A0A158QFW9	PKD_channel domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.700
HDID_LOCUS3400	HDID_LOCUS4701	A0A0R3SF15	A0A0R3SID8	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.421
HDID_LOCUS3400	HDID_LOCUS681	A0A0R3SF15	A0A0R3S901	Uncharacterized protein.	Uncharacterized protein.	0.873
HDID_LOCUS3400	HDID_LOCUS7141	A0A0R3SF15	A0A158QEC1	Uncharacterized protein.	PHD-type domain-containing protein.	0.919
HDID_LOCUS3400	HDID_LOCUS7809	A0A0R3SF15	A0A0R3SRK3	Uncharacterized protein.	Uncharacterized protein.	0.990
HDID_LOCUS3400	HDID_LOCUS8839	A0A0R3SF15	A0A0R3STS9	Uncharacterized protein.	Uncharacterized protein.	0.476
HDID_LOCUS3400	HDID_LOCUS9659	A0A0R3SF15	A0A0R3SVP4	Uncharacterized protein.	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.477
HDID_LOCUS3796	HDID_LOCUS6271	A0A0R3SG00	A0A0R3SMV8	Uncharacterized protein.	RYDR_ITPR domain-containing protein.	0.945
HDID_LOCUS3796	HDID_LOCUS7070	A0A0R3SG00	A0A0R3SPX7	Uncharacterized protein.	Uncharacterized protein.	0.945
HDID_LOCUS3796	HDID_LOCUS7809	A0A0R3SG00	A0A0R3SRK3	Uncharacterized protein.	Uncharacterized protein.	0.405
HDID_LOCUS4701	HDID_LOCUS3400	A0A0R3SID8	A0A0R3SF15	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.421
HDID_LOCUS4701	HDID_LOCUS681	A0A0R3SID8	A0A0R3S901	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.873
HDID_LOCUS4701	HDID_LOCUS7141	A0A0R3SID8	A0A158QEC1	Serine/threonine-protein phosphatase.	PHD-type domain-containing protein.	0.930
HDID_LOCUS4701	HDID_LOCUS7809	A0A0R3SID8	A0A0R3SRK3	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.990