12 items (Hymenolepis diminuta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HDID_LOCUS8719	CULLIN_2 domain-containing protein; Belongs to the cullin family. (1280 aa)
	HDID_LOCUS537	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (191 aa)
	HDID_LOCUS535	Bromo domain-containing protein. (550 aa)
	A0A158QGA9	Uncharacterized protein. (649 aa)
	HDID_LOCUS8414	Uncharacterized protein. (753 aa)
	HDID_LOCUS1462	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (146 aa)
	HDID_LOCUS3706	Uncharacterized protein. (1072 aa)
	HDID_LOCUS7637	Ubiquitin-like domain-containing protein. (129 aa)
	HDID_LOCUS8526	Uncharacterized protein. (2529 aa)
	HDID_LOCUS7380	TPR_REGION domain-containing protein. (660 aa)
	HDID_LOCUS2726	Ubiquitin-like domain-containing protein. (154 aa)
	A0A0R3SY24	RING-type domain-containing protein. (78 aa)

Your Current Organism:

Hymenolepis diminuta

NCBI taxonomy Id: 6216
Other names: H. diminuta, rat tapeworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3SY24	A0A158QGA9	A0A0R3SY24	A0A158QGA9	RING-type domain-containing protein.	Uncharacterized protein.	0.999
A0A0R3SY24	HDID_LOCUS1462	A0A0R3SY24	A0A0R3SAQ9	RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.997
A0A0R3SY24	HDID_LOCUS2726	A0A0R3SY24	A0A158QDB9	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.801
A0A0R3SY24	HDID_LOCUS3706	A0A0R3SY24	A0A0R3SFS2	RING-type domain-containing protein.	Uncharacterized protein.	0.999
A0A0R3SY24	HDID_LOCUS535	A0A0R3SY24	A0A0R3S8P2	RING-type domain-containing protein.	Bromo domain-containing protein.	0.985
A0A0R3SY24	HDID_LOCUS537	A0A0R3SY24	A0A0R3S8P4	RING-type domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.999
A0A0R3SY24	HDID_LOCUS7380	A0A0R3SY24	A0A158QEG5	RING-type domain-containing protein.	TPR_REGION domain-containing protein.	0.999
A0A0R3SY24	HDID_LOCUS8414	A0A0R3SY24	A0A158QF67	RING-type domain-containing protein.	Uncharacterized protein.	0.999
A0A0R3SY24	HDID_LOCUS8526	A0A0R3SY24	A0A0R3ST42	RING-type domain-containing protein.	Uncharacterized protein.	0.999
A0A0R3SY24	HDID_LOCUS8719	A0A0R3SY24	A0A0R3STI4	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.999
A0A158QGA9	A0A0R3SY24	A0A158QGA9	A0A0R3SY24	Uncharacterized protein.	RING-type domain-containing protein.	0.999
A0A158QGA9	HDID_LOCUS1462	A0A158QGA9	A0A0R3SAQ9	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.982
A0A158QGA9	HDID_LOCUS2726	A0A158QGA9	A0A158QDB9	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.790
A0A158QGA9	HDID_LOCUS3706	A0A158QGA9	A0A0R3SFS2	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A158QGA9	HDID_LOCUS535	A0A158QGA9	A0A0R3S8P2	Uncharacterized protein.	Bromo domain-containing protein.	0.985
A0A158QGA9	HDID_LOCUS537	A0A158QGA9	A0A0R3S8P4	Uncharacterized protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.999
A0A158QGA9	HDID_LOCUS7380	A0A158QGA9	A0A158QEG5	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.999
A0A158QGA9	HDID_LOCUS7637	A0A158QGA9	A0A0R3SR70	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.689
A0A158QGA9	HDID_LOCUS8414	A0A158QGA9	A0A158QF67	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A158QGA9	HDID_LOCUS8526	A0A158QGA9	A0A0R3ST42	Uncharacterized protein.	Uncharacterized protein.	0.999