(20 nodes) Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay network (Anopheles funestus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A4Y0BN84	Uncharacterized protein. (922 aa)
	A0A4Y0BQ54	Uncharacterized protein. (326 aa)
	A0A4Y0BPS2	Uncharacterized protein. (1241 aa)
	A0A4Y0BM42	Uncharacterized protein. (1212 aa)
	A0A4Y0BLN2	PINc domain-containing protein. (1563 aa)
	A0A4Y0BL36	Uncharacterized protein. (160 aa)
	A0A4Y0BK74	MIF4G domain-containing protein. (646 aa)
	A0A4Y0BH26	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (3253 aa)
	A0A4Y0BFJ3	Uncharacterized protein. (1211 aa)
	A0A182RZR0	Mago-bind domain-containing protein. (268 aa)
	A0A182RXI4	OB_NTP_bind domain-containing protein. (462 aa)
	A0A182RJK9	Uncharacterized protein. (1214 aa)
	A0A182RI08	5'-3' exoribonuclease 1. (1662 aa)
	A0A182RG13	Uncharacterized protein. (1157 aa)
	A0A182RF54	Uncharacterized protein. (1469 aa)
	A0A182RDK1	Smg4_UPF3 domain-containing protein. (636 aa)
	A0A182RCP5	Uncharacterized protein. (1151 aa)
	A0A182R7S7	Uncharacterized protein. (980 aa)
	A0A182R6I5	mRNA_decap_C domain-containing protein. (592 aa)
	A0A182R3F0	Uncharacterized protein. (953 aa)

Your Current Organism:

Anopheles funestus

NCBI taxonomy Id: 62324
Other names: A. funestus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A182R3F0	A0A182R6I5	Uncharacterized protein.	mRNA_decap_C domain-containing protein.	0.708
A0A182R3F0	A0A182RCP5	Uncharacterized protein.	Uncharacterized protein.	0.616
A0A182R3F0	A0A182RDK1	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.984
A0A182R3F0	A0A182RG13	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A182R3F0	A0A4Y0BH26	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.906
A0A182R3F0	A0A4Y0BK74	Uncharacterized protein.	MIF4G domain-containing protein.	0.674
A0A182R3F0	A0A4Y0BLN2	Uncharacterized protein.	PINc domain-containing protein.	0.724
A0A182R6I5	A0A182R3F0	mRNA_decap_C domain-containing protein.	Uncharacterized protein.	0.708
A0A182R6I5	A0A182R7S7	mRNA_decap_C domain-containing protein.	Uncharacterized protein.	0.817
A0A182R6I5	A0A182RCP5	mRNA_decap_C domain-containing protein.	Uncharacterized protein.	0.834
A0A182R6I5	A0A182RDK1	mRNA_decap_C domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.772
A0A182R6I5	A0A182RG13	mRNA_decap_C domain-containing protein.	Uncharacterized protein.	0.964
A0A182R6I5	A0A182RI08	mRNA_decap_C domain-containing protein.	5'-3' exoribonuclease 1.	0.996
A0A182R6I5	A0A182RXI4	mRNA_decap_C domain-containing protein.	OB_NTP_bind domain-containing protein.	0.562
A0A182R6I5	A0A4Y0BFJ3	mRNA_decap_C domain-containing protein.	Uncharacterized protein.	0.562
A0A182R6I5	A0A4Y0BH26	mRNA_decap_C domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.642
A0A182R6I5	A0A4Y0BK74	mRNA_decap_C domain-containing protein.	MIF4G domain-containing protein.	0.584
A0A182R6I5	A0A4Y0BLN2	mRNA_decap_C domain-containing protein.	PINc domain-containing protein.	0.827
A0A182R6I5	A0A4Y0BN84	mRNA_decap_C domain-containing protein.	Uncharacterized protein.	0.708
A0A182R6I5	A0A4Y0BPS2	mRNA_decap_C domain-containing protein.	Uncharacterized protein.	0.708