15 items (Anopheles funestus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A182RZ53	DRMBL domain-containing protein. (403 aa)
	A0A4Y0BGL4	RING-type domain-containing protein. (352 aa)
	A0A4Y0BG65	Ubiquitin-like domain-containing protein. (165 aa)
	A0A182RVD6	Uncharacterized protein. (1504 aa)
	A0A182RQB5	Ubiquitin-like domain-containing protein. (463 aa)
	A0A182RQB4	RING-type domain-containing protein. (379 aa)
	A0A182RNF2	Uncharacterized protein. (1979 aa)
	A0A182RF93	RING-type domain-containing protein. (735 aa)
	A0A182RCU6	Uncharacterized protein. (691 aa)
	A0A182RAF5	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR). (904 aa)
	A0A182R915	Lactamase_B domain-containing protein. (788 aa)
	A0A182R7K0	Uncharacterized protein. (1384 aa)
	A0A182R4Q7	XPA_C domain-containing protein. (278 aa)
	A0A182R4Q0	Uncharacterized protein. (1227 aa)
	A0A182R4N6	ERCC4 domain-containing protein. (1041 aa)

Your Current Organism:

Anopheles funestus

NCBI taxonomy Id: 62324
Other names: A. funestus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A182R4N6	A0A182R4Q0	ERCC4 domain-containing protein.	Uncharacterized protein.	0.966
A0A182R4N6	A0A182R4Q7	ERCC4 domain-containing protein.	XPA_C domain-containing protein.	0.991
A0A182R4N6	A0A182R7K0	ERCC4 domain-containing protein.	Uncharacterized protein.	0.923
A0A182R4N6	A0A182R915	ERCC4 domain-containing protein.	Lactamase_B domain-containing protein.	0.746
A0A182R4N6	A0A182RAF5	ERCC4 domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.901
A0A182R4N6	A0A182RF93	ERCC4 domain-containing protein.	RING-type domain-containing protein.	0.516
A0A182R4N6	A0A182RNF2	ERCC4 domain-containing protein.	Uncharacterized protein.	0.711
A0A182R4N6	A0A182RQB4	ERCC4 domain-containing protein.	RING-type domain-containing protein.	0.924
A0A182R4N6	A0A182RQB5	ERCC4 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.924
A0A182R4N6	A0A182RVD6	ERCC4 domain-containing protein.	Uncharacterized protein.	0.902
A0A182R4N6	A0A182RZ53	ERCC4 domain-containing protein.	DRMBL domain-containing protein.	0.724
A0A182R4N6	A0A4Y0BG65	ERCC4 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.924
A0A182R4N6	A0A4Y0BGL4	ERCC4 domain-containing protein.	RING-type domain-containing protein.	0.924
A0A182R4Q0	A0A182R4N6	Uncharacterized protein.	ERCC4 domain-containing protein.	0.966
A0A182R4Q0	A0A182R7K0	Uncharacterized protein.	Uncharacterized protein.	0.669
A0A182R4Q0	A0A182R915	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.709
A0A182R4Q0	A0A182RAF5	Uncharacterized protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.627
A0A182R4Q0	A0A182RNF2	Uncharacterized protein.	Uncharacterized protein.	0.559
A0A182R4Q0	A0A182RQB4	Uncharacterized protein.	RING-type domain-containing protein.	0.626
A0A182R4Q0	A0A182RQB5	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.545