(11 nodes) LDLR class B repeat network (Anopheles funestus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A182RFE9	Uncharacterized protein. (4862 aa)
	A0A4Y0BS45	Uncharacterized protein. (977 aa)
	A0A4Y0BPQ6	Uncharacterized protein. (1847 aa)
	A0A4Y0BMZ2	Uncharacterized protein. (884 aa)
	A0A4Y0BM09	Uncharacterized protein. (1164 aa)
	A0A4Y0BJH6	Uncharacterized protein. (976 aa)
	A0A182RW24	Uncharacterized protein. (2246 aa)
	A0A182RM40	Uncharacterized protein. (4691 aa)
	A0A182R204	Uncharacterized protein. (2053 aa)
	A0A182R340	Uncharacterized protein. (700 aa)
	A0A182RCN5	Uncharacterized protein. (1306 aa)

Your Current Organism:

Anopheles funestus

NCBI taxonomy Id: 62324
Other names: A. funestus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A182R204	A0A4Y0BPQ6	Uncharacterized protein.	Uncharacterized protein.	0.401
A0A182RFE9	A0A4Y0BPQ6	Uncharacterized protein.	Uncharacterized protein.	0.468
A0A182RM40	A0A4Y0BPQ6	Uncharacterized protein.	Uncharacterized protein.	0.456
A0A4Y0BJH6	A0A4Y0BPQ6	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A4Y0BM09	A0A4Y0BPQ6	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A4Y0BMZ2	A0A4Y0BPQ6	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A4Y0BPQ6	A0A182R204	Uncharacterized protein.	Uncharacterized protein.	0.401
A0A4Y0BPQ6	A0A182RFE9	Uncharacterized protein.	Uncharacterized protein.	0.468
A0A4Y0BPQ6	A0A182RM40	Uncharacterized protein.	Uncharacterized protein.	0.456
A0A4Y0BPQ6	A0A4Y0BJH6	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A4Y0BPQ6	A0A4Y0BM09	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A4Y0BPQ6	A0A4Y0BMZ2	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A4Y0BPQ6	A0A4Y0BS45	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A4Y0BS45	A0A4Y0BPQ6	Uncharacterized protein.	Uncharacterized protein.	0.424