(11 nodes) Mixed, incl. Cell envelope organization, and Uroporphyrinogen-III synthase HemD network (Parapedobacter luteus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SKB28792.1	Tetratricopeptide repeat-containing protein. (225 aa)
	SKB35410.1	Protein of unknown function. (112 aa)
	SKB57886.1	OstA-like protein. (825 aa)
	SKB58594.1	Protein of unknown function. (215 aa)
	SKB77427.1	Family of unknown function. (1465 aa)
	SKB79323.1	Hypothetical protein. (140 aa)
	SKB85162.1	uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (257 aa)
	SKB85167.1	Protein of unknown function. (327 aa)
	SKB85605.1	Hypothetical protein. (350 aa)
	SKB85610.1	Lipopolysaccharide-assembly. (178 aa)
	miaB	tRNA-2-methylthio-N6-dimethylallyladenosine synthase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (467 aa)

Your Current Organism:

Parapedobacter luteus

NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKB28792.1	SKB35410.1	SAMN05660226_00432	SAMN05660226_00849	Tetratricopeptide repeat-containing protein.	Protein of unknown function.	0.688
SKB28792.1	SKB57886.1	SAMN05660226_00432	SAMN05660226_02153	Tetratricopeptide repeat-containing protein.	OstA-like protein.	0.760
SKB28792.1	SKB58594.1	SAMN05660226_00432	SAMN05660226_02218	Tetratricopeptide repeat-containing protein.	Protein of unknown function.	0.766
SKB28792.1	SKB77427.1	SAMN05660226_00432	SAMN05660226_03063	Tetratricopeptide repeat-containing protein.	Family of unknown function.	0.771
SKB28792.1	SKB79323.1	SAMN05660226_00432	SAMN05660226_03183	Tetratricopeptide repeat-containing protein.	Hypothetical protein.	0.680
SKB28792.1	SKB85162.1	SAMN05660226_00432	SAMN05660226_03432	Tetratricopeptide repeat-containing protein.	uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.	0.647
SKB28792.1	SKB85167.1	SAMN05660226_00432	SAMN05660226_03433	Tetratricopeptide repeat-containing protein.	Protein of unknown function.	0.426
SKB28792.1	SKB85605.1	SAMN05660226_00432	SAMN05660226_03478	Tetratricopeptide repeat-containing protein.	Hypothetical protein.	0.657
SKB28792.1	SKB85610.1	SAMN05660226_00432	SAMN05660226_03479	Tetratricopeptide repeat-containing protein.	Lipopolysaccharide-assembly.	0.750
SKB35410.1	SKB28792.1	SAMN05660226_00849	SAMN05660226_00432	Protein of unknown function.	Tetratricopeptide repeat-containing protein.	0.688
SKB35410.1	SKB57886.1	SAMN05660226_00849	SAMN05660226_02153	Protein of unknown function.	OstA-like protein.	0.424
SKB35410.1	SKB58594.1	SAMN05660226_00849	SAMN05660226_02218	Protein of unknown function.	Protein of unknown function.	0.741
SKB35410.1	SKB77427.1	SAMN05660226_00849	SAMN05660226_03063	Protein of unknown function.	Family of unknown function.	0.719
SKB35410.1	SKB79323.1	SAMN05660226_00849	SAMN05660226_03183	Protein of unknown function.	Hypothetical protein.	0.621
SKB35410.1	SKB85162.1	SAMN05660226_00849	SAMN05660226_03432	Protein of unknown function.	uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.	0.583
SKB35410.1	SKB85610.1	SAMN05660226_00849	SAMN05660226_03479	Protein of unknown function.	Lipopolysaccharide-assembly.	0.582
SKB57886.1	SKB28792.1	SAMN05660226_02153	SAMN05660226_00432	OstA-like protein.	Tetratricopeptide repeat-containing protein.	0.760
SKB57886.1	SKB35410.1	SAMN05660226_02153	SAMN05660226_00849	OstA-like protein.	Protein of unknown function.	0.424
SKB57886.1	SKB58594.1	SAMN05660226_02153	SAMN05660226_02218	OstA-like protein.	Protein of unknown function.	0.699
SKB57886.1	SKB77427.1	SAMN05660226_02153	SAMN05660226_03063	OstA-like protein.	Family of unknown function.	0.771