(32 nodes) Generation of second messenger molecules network (Danionella translucida)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DNTS_029939	Ig-like domain-containing protein. (119 aa)
	DNTS_018060	Uncharacterized protein. (385 aa)
	DNTS_003337	Uncharacterized protein. (1449 aa)
	DNTS_012442	Non-specific serine/threonine protein kinase. (609 aa)
	DNTS_003330	Uncharacterized protein. (1175 aa)
	DNTS_029642	Non-specific serine/threonine protein kinase. (628 aa)
	DNTS_024812	Uncharacterized protein. (152 aa)
	DNTS_001879	DDE_Tnp_1_7 domain-containing protein. (752 aa)
	DNTS_017840	MFS domain-containing protein. (494 aa)
	DNTS_029917	Uncharacterized protein. (60 aa)
	DNTS_029925	Non-specific serine/threonine protein kinase. (504 aa)
	DNTS_029947	Ig-like domain-containing protein. (203 aa)
	DNTS_029950	Ig-like domain-containing protein. (119 aa)
	DNTS_033988	Non-specific serine/threonine protein kinase. (572 aa)
	DNTS_003999	MFS domain-containing protein. (478 aa)
	DNTS_004001	Uncharacterized protein. (114 aa)
	DNTS_002013	Uncharacterized protein. (673 aa)
	DNTS_030448	Uncharacterized protein. (88 aa)
	DNTS_014430	Ig-like domain-containing protein. (180 aa)
	DNTS_022714	Uncharacterized protein. (178 aa)
	DNTS_002057	Uncharacterized protein. (243 aa)
	DNTS_033929	Uncharacterized protein. (243 aa)
	DNTS_035086	Uncharacterized protein. (142 aa)
	DNTS_004136	Phosphoinositide phospholipase C. (752 aa)
	DNTS_008186	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades. (1202 aa)
	DNTS_015731	Uncharacterized protein. (323 aa)
	DNTS_007125	DDE_Tnp_1_7 domain-containing protein. (620 aa)
	DNTS_015022	Tyrosine-protein kinase. (582 aa)
	DNTS_016945	Uncharacterized protein. (922 aa)
	DNTS_026447	Uncharacterized protein. (256 aa)
	DNTS_026448	Uncharacterized protein. (426 aa)
	DNTS_027810	SH2 domain-containing protein. (164 aa)

Your Current Organism:

Danionella translucida

NCBI taxonomy Id: 623744
Other names: D. translucida

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DNTS_001879	DNTS_002013	A0A553QXC5	A0A553RB38	DDE_Tnp_1_7 domain-containing protein.	Uncharacterized protein.	0.400
DNTS_001879	DNTS_002057	A0A553QXC5	A0A553MZ13	DDE_Tnp_1_7 domain-containing protein.	Uncharacterized protein.	0.729
DNTS_001879	DNTS_014430	A0A553QXC5	A0A553MXL1	DDE_Tnp_1_7 domain-containing protein.	Ig-like domain-containing protein.	0.843
DNTS_001879	DNTS_015022	A0A553QXC5	A0A553QFV9	DDE_Tnp_1_7 domain-containing protein.	Tyrosine-protein kinase.	0.588
DNTS_001879	DNTS_015731	A0A553QXC5	A0A553QD34	DDE_Tnp_1_7 domain-containing protein.	Uncharacterized protein.	0.729
DNTS_001879	DNTS_022714	A0A553QXC5	A0A553MY08	DDE_Tnp_1_7 domain-containing protein.	Uncharacterized protein.	0.999
DNTS_001879	DNTS_024812	A0A553QXC5	A0A553QRX5	DDE_Tnp_1_7 domain-containing protein.	Uncharacterized protein.	0.997
DNTS_001879	DNTS_027810	A0A553QXC5	A0A553RNR2	DDE_Tnp_1_7 domain-containing protein.	SH2 domain-containing protein.	0.831
DNTS_001879	DNTS_029917	A0A553QXC5	A0A553RPW0	DDE_Tnp_1_7 domain-containing protein.	Uncharacterized protein.	0.805
DNTS_001879	DNTS_029939	A0A553QXC5	A0A553RPZ4	DDE_Tnp_1_7 domain-containing protein.	Ig-like domain-containing protein.	0.434
DNTS_001879	DNTS_029947	A0A553QXC5	A0A553RQ01	DDE_Tnp_1_7 domain-containing protein.	Ig-like domain-containing protein.	0.434
DNTS_001879	DNTS_029950	A0A553QXC5	A0A553RQ17	DDE_Tnp_1_7 domain-containing protein.	Ig-like domain-containing protein.	0.434
DNTS_002013	DNTS_001879	A0A553RB38	A0A553QXC5	Uncharacterized protein.	DDE_Tnp_1_7 domain-containing protein.	0.400
DNTS_002013	DNTS_002057	A0A553RB38	A0A553MZ13	Uncharacterized protein.	Uncharacterized protein.	0.760
DNTS_002013	DNTS_015731	A0A553RB38	A0A553QD34	Uncharacterized protein.	Uncharacterized protein.	0.760
DNTS_002013	DNTS_027810	A0A553RB38	A0A553RNR2	Uncharacterized protein.	SH2 domain-containing protein.	0.992
DNTS_002057	DNTS_001879	A0A553MZ13	A0A553QXC5	Uncharacterized protein.	DDE_Tnp_1_7 domain-containing protein.	0.729
DNTS_002057	DNTS_002013	A0A553MZ13	A0A553RB38	Uncharacterized protein.	Uncharacterized protein.	0.760
DNTS_002057	DNTS_004136	A0A553MZ13	A0A553Q4S6	Uncharacterized protein.	Phosphoinositide phospholipase C.	0.851
DNTS_002057	DNTS_007125	A0A553MZ13	A0A553MYB2	Uncharacterized protein.	DDE_Tnp_1_7 domain-containing protein.	0.634