(32 nodes) Mixed, incl. Pumilio homology domain, and Male pronucleus network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	puf-5	Protein CBR-PUF-5. (453 aa)
	puf-3	Protein CBR-PUF-11. (526 aa)
	CBG02391	Protein CBG02391. (183 aa)
	CBG03708	Protein CBG03708. (485 aa)
	rme-2	Protein CBR-RME-2. (929 aa)
	CBG06211	Protein CBG06211. (175 aa)
	puf-6.3	Protein CBG06390. (340 aa)
	mesp-1.1	Protein CBG08360. (173 aa)
	CBG09062	Protein CBG09062. (202 aa)
	CBG09653	Protein CBG09653. (257 aa)
	puf-4	Protein CBG09894. (526 aa)
	rmd-1	Protein CBR-RMD-1. (226 aa)
	puf-6.2	Protein CBG11800. (437 aa)
	clec-91	Protein CBR-CLEC-91. (260 aa)
	CBG12862	Protein CBG12862. (315 aa)
	CBG12606	Protein CBG12606. (325 aa)
	mei-2	Protein CBG12676. (274 aa)
	puf-6.1	Protein CBG13175. (394 aa)
	daf-18	Protein CBR-DAF-18. (992 aa)
	mesp-1.4	Protein CBG13753. (193 aa)
	CBG14962	Protein CBG14962. (223 aa)
	mesp-1.2	Protein CBG17686. (193 aa)
	CBG18998	Protein CBG18998. (386 aa)
	spn-4	Protein CBR-SPN-4. (360 aa)
	gna-2	Glucosamine 6-phosphate N-acetyltransferase; Belongs to the acetyltransferase family. GNA1 subfamily. (349 aa)
	nasp-2	Protein CBR-NASP-2. (555 aa)
	trcs-1	Protein CBG20044. (467 aa)
	CBG20563	Protein CBG20563. (313 aa)
	CBG25360	Protein CBG25360. (135 aa)
	CBG25382	Protein CBG25382. (94 aa)
	dvc-1	Protein CBG23144. (353 aa)
	F18A1.7	Protein CBG13025. (264 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG02391	CBG03708	A8WUF5	A8WWI4	Protein CBG02391.	Protein CBG03708.	0.418
CBG02391	CBG06211	A8WUF5	A8X0N0	Protein CBG02391.	Protein CBG06211.	0.455
CBG02391	CBG09062	A8WUF5	A8X7W3	Protein CBG02391.	Protein CBG09062.	0.981
CBG02391	CBG09653	A8WUF5	A8X8J7	Protein CBG02391.	Protein CBG09653.	0.879
CBG02391	CBG12606	A8WUF5	A8XG53	Protein CBG02391.	Protein CBG12606.	0.449
CBG02391	CBG12862	A8WUF5	A8XFR8	Protein CBG02391.	Protein CBG12862.	0.429
CBG02391	CBG18998	A8WUF5	A8XUJ2	Protein CBG02391.	Protein CBG18998.	0.424
CBG02391	CBG20563	A8WUF5	A8XY33	Protein CBG02391.	Protein CBG20563.	0.981
CBG02391	CBG25382	A8WUF5	B6IIP6	Protein CBG02391.	Protein CBG25382.	0.429
CBG02391	F18A1.7	A8WUF5	O97455	Protein CBG02391.	Protein CBG13025.	0.981
CBG02391	clec-91	A8WUF5	A8XFG6	Protein CBG02391.	Protein CBR-CLEC-91.	0.981
CBG02391	dvc-1	A8WUF5	E3CU94	Protein CBG02391.	Protein CBG23144.	0.856
CBG02391	gna-2	A8WUF5	A8XVA0	Protein CBG02391.	Glucosamine 6-phosphate N-acetyltransferase; Belongs to the acetyltransferase family. GNA1 subfamily.	0.459
CBG02391	mesp-1.1	A8WUF5	A8X6D7	Protein CBG02391.	Protein CBG08360.	0.981
CBG02391	mesp-1.2	A8WUF5	A8XRI6	Protein CBG02391.	Protein CBG17686.	0.981
CBG02391	mesp-1.4	A8WUF5	A8XIL9	Protein CBG02391.	Protein CBG13753.	0.981
CBG02391	nasp-2	A8WUF5	A8XVG3	Protein CBG02391.	Protein CBR-NASP-2.	0.454
CBG02391	puf-5	A8WUF5	A8WNC5	Protein CBG02391.	Protein CBR-PUF-5.	0.981
CBG03708	CBG02391	A8WWI4	A8WUF5	Protein CBG03708.	Protein CBG02391.	0.418
CBG03708	CBG06211	A8WWI4	A8X0N0	Protein CBG03708.	Protein CBG06211.	0.420