(16 nodes) Mostly uncharacterized, incl. SHNi-TPR, and Male pronucleus network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	puf-5	Protein CBR-PUF-5. (453 aa)
	CBG02391	Protein CBG02391. (183 aa)
	rme-2	Protein CBR-RME-2. (929 aa)
	mesp-1.1	Protein CBG08360. (173 aa)
	CBG09062	Protein CBG09062. (202 aa)
	CBG09653	Protein CBG09653. (257 aa)
	clec-91	Protein CBR-CLEC-91. (260 aa)
	CBG12862	Protein CBG12862. (315 aa)
	mei-2	Protein CBG12676. (274 aa)
	mesp-1.4	Protein CBG13753. (193 aa)
	mesp-1.2	Protein CBG17686. (193 aa)
	CBG18998	Protein CBG18998. (386 aa)
	gna-2	Glucosamine 6-phosphate N-acetyltransferase; Belongs to the acetyltransferase family. GNA1 subfamily. (349 aa)
	nasp-2	Protein CBR-NASP-2. (555 aa)
	CBG20563	Protein CBG20563. (313 aa)
	F18A1.7	Protein CBG13025. (264 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG02391	CBG09062	A8WUF5	A8X7W3	Protein CBG02391.	Protein CBG09062.	0.981
CBG02391	CBG09653	A8WUF5	A8X8J7	Protein CBG02391.	Protein CBG09653.	0.879
CBG02391	CBG12862	A8WUF5	A8XFR8	Protein CBG02391.	Protein CBG12862.	0.429
CBG02391	CBG18998	A8WUF5	A8XUJ2	Protein CBG02391.	Protein CBG18998.	0.424
CBG02391	CBG20563	A8WUF5	A8XY33	Protein CBG02391.	Protein CBG20563.	0.981
CBG02391	F18A1.7	A8WUF5	O97455	Protein CBG02391.	Protein CBG13025.	0.981
CBG02391	clec-91	A8WUF5	A8XFG6	Protein CBG02391.	Protein CBR-CLEC-91.	0.981
CBG02391	gna-2	A8WUF5	A8XVA0	Protein CBG02391.	Glucosamine 6-phosphate N-acetyltransferase; Belongs to the acetyltransferase family. GNA1 subfamily.	0.459
CBG02391	mesp-1.1	A8WUF5	A8X6D7	Protein CBG02391.	Protein CBG08360.	0.981
CBG02391	mesp-1.2	A8WUF5	A8XRI6	Protein CBG02391.	Protein CBG17686.	0.981
CBG02391	mesp-1.4	A8WUF5	A8XIL9	Protein CBG02391.	Protein CBG13753.	0.981
CBG02391	nasp-2	A8WUF5	A8XVG3	Protein CBG02391.	Protein CBR-NASP-2.	0.454
CBG02391	puf-5	A8WUF5	A8WNC5	Protein CBG02391.	Protein CBR-PUF-5.	0.981
CBG09062	CBG02391	A8X7W3	A8WUF5	Protein CBG09062.	Protein CBG02391.	0.981
CBG09062	CBG09653	A8X7W3	A8X8J7	Protein CBG09062.	Protein CBG09653.	0.981
CBG09062	CBG12862	A8X7W3	A8XFR8	Protein CBG09062.	Protein CBG12862.	0.981
CBG09062	CBG18998	A8X7W3	A8XUJ2	Protein CBG09062.	Protein CBG18998.	0.981
CBG09062	CBG20563	A8X7W3	A8XY33	Protein CBG09062.	Protein CBG20563.	0.981
CBG09062	F18A1.7	A8X7W3	O97455	Protein CBG09062.	Protein CBG13025.	0.981
CBG09062	clec-91	A8X7W3	A8XFG6	Protein CBG09062.	Protein CBR-CLEC-91.	0.983