STRINGSTRING
stip-1 stip-1 CBG23818 CBG23818 CBG23820 CBG23820 snu-23 snu-23 cyn-8 cyn-8 CBG00304 CBG00304 cyn-13 cyn-13 sfa-1 sfa-1 snr-1 snr-1 CBG00609 CBG00609 CBG00888 CBG00888 cyn-4 cyn-4 let-858 let-858 snr-3 snr-3 rbmx-2 rbmx-2 mog-5 mog-5 CBG03465 CBG03465 mog-2 mog-2 snr-7 snr-7 CBG04229 CBG04229 CBG03724 CBG03724 CBG04249 CBG04249 CBG04254 CBG04254 CBG04748 CBG04748 CBG05151 CBG05151 prp-6 prp-6 repo-1 repo-1 cyn-12 cyn-12 sftb-2 sftb-2 CBG06840 CBG06840 CBG07130 CBG07130 prp-21 prp-21 CBG06987 CBG06987 snrp-200 snrp-200 smu-1 smu-1 rsr-1 rsr-1 cyn-15 cyn-15 smgl-2 smgl-2 CBG08683 CBG08683 ddx-23 ddx-23 eftu-2 eftu-2 ddx-15 ddx-15 plrg-1 plrg-1 prp-38 prp-38 CBG09591 CBG09591 CBG09283 CBG09283 CBG09775 CBG09775 mog-1 mog-1 bud-31 bud-31 pqbp-1.1 pqbp-1.1 prp-31 prp-31 cyn-10 cyn-10 tcer-1 tcer-1 CBG11516 CBG11516 rde-12 rde-12 ddx-17 ddx-17 snr-6 snr-6 CBG12001 CBG12001 let-504 let-504 CBG12096 CBG12096 syf-1 syf-1 snr-5 snr-5 prp-4 prp-4 sig-7 sig-7 mfap-1 mfap-1 cdc-5l cdc-5l teg-4 teg-4 CBG12926 CBG12926 moa-2 moa-2 CBG13259 CBG13259 sap-49 sap-49 CBG13531 CBG13531 rnp-3 rnp-3 rnp-2 rnp-2 CBG14894 CBG14894 ddx-35 ddx-35 CBG15349 CBG15349 phf-5 phf-5 prp-8 prp-8 CBG16678 CBG16678 CBG16567 CBG16567 rnp-7 rnp-7 CBG16611 CBG16611 snrp-40.1 snrp-40.1 CBG17493 CBG17493 CBG17488 CBG17488 gkow-1 gkow-1 rbm-22 rbm-22 smu-2 smu-2 CBG18320 CBG18320 prp-3 prp-3 CBG18044 CBG18044 CBG18072 CBG18072 cus-2 cus-2 gad-1 gad-1 CBG19656 CBG19656 ccdc-55 ccdc-55 snr-2 snr-2 prp-17 prp-17 mog-4 mog-4 rsr-2 rsr-2 cyn-16 cyn-16 sftb-1 sftb-1 CBG21260 CBG21260 prp-19 prp-19 CBG22442 CBG22442 CBG22501 CBG22501 cwc-15 cwc-15 rnp-1 rnp-1 snr-4 snr-4 skp-1 skp-1 isy-1 isy-1 CBG27386 CBG27386 mog-3 mog-3 syf-2 syf-2 rnf-113 rnf-113
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
stip-1Septin and tuftelin-interacting protein 1 homolog; May be involved in pre-mRNA splicing. Belongs to the TFP11/STIP family. (823 aa)
CBG23818Protein CBG23818. (184 aa)
CBG23820Protein CBG23820. (146 aa)
snu-23Protein CBG00030. (218 aa)
cyn-8Protein CBR-CYN-8. (457 aa)
CBG00304Protein CBG00304. (247 aa)
cyn-13Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (332 aa)
sfa-1Protein CBR-SFA-1. (664 aa)
snr-1Small nuclear ribonucleoprotein Sm D3. (136 aa)
CBG00609Protein CBG00609. (134 aa)
CBG00888Protein CBG00888. (366 aa)
cyn-4Protein CBR-CYN-4. (523 aa)
let-858Pre-mRNA-splicing factor CWC22 homolog; Required for early embryogenesis and tissue differentiation. Required for pre-mRNA splicing and for exon-junction complex (EJC) assembly. Hinders EIF4A3 from non-specifically binding RNA and escorts it to the splicing machinery to promote EJC assembly on mature mRNAs. Through its role in EJC assembly, required for nonsense-mediated mRNA decay (By similarity); Belongs to the CWC22 family. (935 aa)
snr-3Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (127 aa)
rbmx-2Protein CBG02589. (302 aa)
mog-5Protein CBR-MOG-5. (1220 aa)
CBG03465Protein CBG03465. (352 aa)
mog-2Protein CBR-MOG-2. (253 aa)
snr-7Small nuclear ribonucleoprotein G. (79 aa)
CBG04229Protein CBG04229. (269 aa)
CBG03724Protein CBG03724. (233 aa)
CBG04249Protein CBG04249. (513 aa)
CBG04254Protein CBG04254. (80 aa)
CBG04748Protein CBG04748. (501 aa)
CBG05151Protein CBG05151. (219 aa)
prp-6Protein CBR-PRP-6. (956 aa)
repo-1Protein CBR-REPO-1. (222 aa)
cyn-12Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (169 aa)
sftb-2Protein CBG06453. (606 aa)
CBG06840Protein CBG06840. (465 aa)
CBG07130Protein CBG07130. (399 aa)
prp-21Protein CBR-PRP-21. (689 aa)
CBG06987Protein CBG06987. (138 aa)
snrp-200Protein CBG07909. (2145 aa)
smu-1Protein CBR-SMU-1. (510 aa)
rsr-1Protein CBR-RSR-1. (581 aa)
cyn-15Protein CBR-CYN-15. (639 aa)
smgl-2Protein CBR-SMGL-2. (1021 aa)
CBG08683Protein CBG08683. (320 aa)
ddx-23Protein CBG09074; Belongs to the DEAD box helicase family. (747 aa)
eftu-2Protein CBR-EFTU-2. (990 aa)
ddx-15Protein CBG08977. (754 aa)
plrg-1Protein CBR-TAG-135. (508 aa)
prp-38Protein CBG09713. (317 aa)
CBG09591Protein CBG09591. (635 aa)
CBG09283Protein CBG09283. (761 aa)
CBG09775Protein CBG09775. (820 aa)
mog-1Protein CBR-MOG-1. (990 aa)
bud-31Protein CBG10019. (147 aa)
pqbp-1.1Protein CBR-PQBP-1.2. (272 aa)
prp-31Protein CBR-PRP-31. (505 aa)
cyn-10Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
tcer-1Protein CBR-TCER-1. (920 aa)
CBG11516Protein CBG11516. (797 aa)
rde-12Protein CBG11510. (1248 aa)
ddx-17Protein CBG11408; Belongs to the DEAD box helicase family. (559 aa)
snr-6Probable small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (90 aa)
CBG12001Protein CBG12001. (321 aa)
let-504Protein CBG12065. (538 aa)
CBG12096Protein CBG12096. (1005 aa)
syf-1Protein CBG11979. (898 aa)
snr-5Protein CBR-SNR-5; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (86 aa)
prp-4Protein CBR-PRP-4. (496 aa)
sig-7Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (434 aa)
mfap-1Protein CBR-MFAP-1. (467 aa)
cdc-5lProtein CBG12532. (790 aa)
teg-4Protein CBR-TEG-4. (1218 aa)
CBG12926Protein CBG12926; Belongs to the peptidase C1 family. (386 aa)
moa-2Protein CBG13037. (219 aa)
CBG13259Protein CBG13259. (241 aa)
sap-49Protein CBR-SAP-49. (338 aa)
CBG13531Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
rnp-3Protein CBR-RNP-3. (220 aa)
rnp-2Protein CBR-RNP-2. (206 aa)
CBG14894Protein CBG14894. (545 aa)
ddx-35Protein CBG15221. (722 aa)
CBG15349Protein CBG15349. (473 aa)
phf-5Protein CBR-PHF-5. (110 aa)
prp-8Protein CBR-PRP-8. (2464 aa)
CBG16678Protein CBG16678. (1000 aa)
CBG16567Protein CBG16567. (170 aa)
rnp-7Protein CBR-RNP-7. (312 aa)
CBG16611Protein CBG16611. (326 aa)
snrp-40.1Protein CBG17375. (331 aa)
CBG17493Protein CBG17493. (658 aa)
CBG17488Protein CBG17488. (901 aa)
gkow-1Protein CBG17653. (455 aa)
rbm-22Protein CBG17615. (409 aa)
smu-2Protein CBR-SMU-2. (530 aa)
CBG18320Protein CBG18320. (90 aa)
prp-3Protein CBR-PRP-3. (637 aa)
CBG18044Protein CBG18044. (348 aa)
CBG18072Protein CBG18072. (810 aa)
cus-2Protein CBG18539. (192 aa)
gad-1Protein CBR-GAD-1. (621 aa)
CBG19656U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (142 aa)
ccdc-55Nuclear speckle splicing regulatory protein 1 homolog; Belongs to the NSRP1 family. (393 aa)
snr-2Protein CBR-SNR-2. (160 aa)
prp-17Protein CBR-PRP-17. (561 aa)
mog-4Protein CBR-MOG-4. (1007 aa)
rsr-2Protein CBR-RSR-2. (498 aa)
cyn-16Protein CBR-CYN-16. (483 aa)
sftb-1Protein CBG21228. (1272 aa)
CBG21260Protein CBG21260. (257 aa)
prp-19Protein CBG21324. (492 aa)
CBG22442Protein CBG22442. (831 aa)
CBG22501Protein CBG22501. (169 aa)
cwc-15Protein CBG22646. (232 aa)
rnp-1Protein CBR-RNP-1. (286 aa)
snr-4Small nuclear ribonucleoprotein Sm D2. (118 aa)
skp-1Protein CBR-SKP-1. (534 aa)
isy-1Protein CBG23070. (268 aa)
CBG27386Protein CBG27386. (488 aa)
mog-3Sex determining protein MOG-3. (507 aa)
syf-2Pre-mRNA-splicing factor syf-2; May be involved in pre-mRNA splicing. (233 aa)
rnf-113Zinc finger protein 183. (385 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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