STRINGSTRING
cyn-8 cyn-8 CBG00304 CBG00304 cyn-4 cyn-4 let-858 let-858 mog-5 mog-5 CBG03465 CBG03465 CBG05151 CBG05151 cyn-12 cyn-12 CBG07130 CBG07130 rsr-1 rsr-1 cyn-15 cyn-15 smgl-2 smgl-2 CBG09591 CBG09591 mog-1 mog-1 cyn-10 cyn-10 CBG11516 CBG11516 ddx-17 ddx-17 let-504 let-504 sig-7 sig-7 CBG13259 CBG13259 ddx-35 ddx-35 CBG16567 CBG16567 CBG16611 CBG16611 CBG18320 CBG18320 CBG18072 CBG18072 gad-1 gad-1 ccdc-55 ccdc-55 prp-17 prp-17 rsr-2 rsr-2 CBG22501 CBG22501 mog-3 mog-3 syf-2 syf-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cyn-8Protein CBR-CYN-8. (457 aa)
CBG00304Protein CBG00304. (247 aa)
cyn-4Protein CBR-CYN-4. (523 aa)
let-858Pre-mRNA-splicing factor CWC22 homolog; Required for early embryogenesis and tissue differentiation. Required for pre-mRNA splicing and for exon-junction complex (EJC) assembly. Hinders EIF4A3 from non-specifically binding RNA and escorts it to the splicing machinery to promote EJC assembly on mature mRNAs. Through its role in EJC assembly, required for nonsense-mediated mRNA decay (By similarity); Belongs to the CWC22 family. (935 aa)
mog-5Protein CBR-MOG-5. (1220 aa)
CBG03465Protein CBG03465. (352 aa)
CBG05151Protein CBG05151. (219 aa)
cyn-12Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (169 aa)
CBG07130Protein CBG07130. (399 aa)
rsr-1Protein CBR-RSR-1. (581 aa)
cyn-15Protein CBR-CYN-15. (639 aa)
smgl-2Protein CBR-SMGL-2. (1021 aa)
CBG09591Protein CBG09591. (635 aa)
mog-1Protein CBR-MOG-1. (990 aa)
cyn-10Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
CBG11516Protein CBG11516. (797 aa)
ddx-17Protein CBG11408; Belongs to the DEAD box helicase family. (559 aa)
let-504Protein CBG12065. (538 aa)
sig-7Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (434 aa)
CBG13259Protein CBG13259. (241 aa)
ddx-35Protein CBG15221. (722 aa)
CBG16567Protein CBG16567. (170 aa)
CBG16611Protein CBG16611. (326 aa)
CBG18320Protein CBG18320. (90 aa)
CBG18072Protein CBG18072. (810 aa)
gad-1Protein CBR-GAD-1. (621 aa)
ccdc-55Nuclear speckle splicing regulatory protein 1 homolog; Belongs to the NSRP1 family. (393 aa)
prp-17Protein CBR-PRP-17. (561 aa)
rsr-2Protein CBR-RSR-2. (498 aa)
CBG22501Protein CBG22501. (169 aa)
mog-3Sex determining protein MOG-3. (507 aa)
syf-2Pre-mRNA-splicing factor syf-2; May be involved in pre-mRNA splicing. (233 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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