(18 nodes) Processing of SMDT1, and Band 7/stomatin-like, conserved site network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	stl-1	Protein CBR-STL-1. (323 aa)
	micu-1	Calcium uptake protein 1 homolog, mitochondrial; Key regulator of mitochondrial calcium uniporter (MCU). Belongs to the MICU1 family. MICU1 subfamily. (533 aa)
	phb-2	Prohibitin. (294 aa)
	CBG06677	Protein CBG06677. (456 aa)
	emre-1	Protein CBR-TAG-299. (91 aa)
	mcu-1	Protein CBR-MCU-1. (333 aa)
	CBG09969	Protein CBG09969. (568 aa)
	CBG12981	Protein CBG12981. (268 aa)
	sto-2	Protein CBR-STO-2. (320 aa)
	CBG14808	Protein CBG14808. (161 aa)
	mec-2	Protein CBR-MEC-2. (317 aa)
	spg-7	Protein CBR-SPG-7. (814 aa)
	rom-5	Protein CBR-ROM-5. (336 aa)
	CBG15558	Protein CBG15558. (47 aa)
	sto-1	Protein CBR-STO-1. (341 aa)
	CBG16820	Protein CBG16820. (749 aa)
	sto-4	Protein CBR-STO-4. (281 aa)
	phb-1	Prohibitin. (275 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG06677	CBG09969	A8X2U3	A8XA23	Protein CBG06677.	Protein CBG09969.	0.521
CBG06677	CBG12981	A8X2U3	A8XGT7	Protein CBG06677.	Protein CBG12981.	0.460
CBG06677	CBG16820	A8X2U3	A8XPV8	Protein CBG06677.	Protein CBG16820.	0.623
CBG06677	emre-1	A8X2U3	A8X4D2	Protein CBG06677.	Protein CBR-TAG-299.	0.987
CBG06677	mcu-1	A8X2U3	A8X919	Protein CBG06677.	Protein CBR-MCU-1.	0.968
CBG06677	micu-1	A8X2U3	A8WQT4	Protein CBG06677.	Calcium uptake protein 1 homolog, mitochondrial; Key regulator of mitochondrial calcium uniporter (MCU). Belongs to the MICU1 family. MICU1 subfamily.	0.993
CBG06677	phb-1	A8X2U3	A8Y1E4	Protein CBG06677.	Prohibitin.	0.644
CBG06677	phb-2	A8X2U3	A8WTY0	Protein CBG06677.	Prohibitin.	0.814
CBG06677	spg-7	A8X2U3	A8XL27	Protein CBG06677.	Protein CBR-SPG-7.	0.616
CBG09969	CBG06677	A8XA23	A8X2U3	Protein CBG09969.	Protein CBG06677.	0.521
CBG09969	emre-1	A8XA23	A8X4D2	Protein CBG09969.	Protein CBR-TAG-299.	0.602
CBG09969	mcu-1	A8XA23	A8X919	Protein CBG09969.	Protein CBR-MCU-1.	0.575
CBG09969	micu-1	A8XA23	A8WQT4	Protein CBG09969.	Calcium uptake protein 1 homolog, mitochondrial; Key regulator of mitochondrial calcium uniporter (MCU). Belongs to the MICU1 family. MICU1 subfamily.	0.521
CBG09969	phb-1	A8XA23	A8Y1E4	Protein CBG09969.	Prohibitin.	0.416
CBG09969	phb-2	A8XA23	A8WTY0	Protein CBG09969.	Prohibitin.	0.440
CBG12981	CBG06677	A8XGT7	A8X2U3	Protein CBG12981.	Protein CBG06677.	0.460
CBG12981	CBG14808	A8XGT7	A8XKQ7	Protein CBG12981.	Protein CBG14808.	0.564
CBG12981	CBG15558	A8XGT7	A8XM50	Protein CBG12981.	Protein CBG15558.	0.564
CBG12981	CBG16820	A8XGT7	A8XPV8	Protein CBG12981.	Protein CBG16820.	0.540
CBG12981	emre-1	A8XGT7	A8X4D2	Protein CBG12981.	Protein CBR-TAG-299.	0.622