(28 nodes) Mixed, incl. Female somatic sex determination, and Hedgehog on state network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG02127	Protein CBG02127. (439 aa)
	CBG03954	Protein CBG03954. (612 aa)
	wwp-1	E3 ubiquitin-protein ligase. (794 aa)
	CBG05518	Protein CBG05518. (509 aa)
	num-1	Protein CBR-NUM-1. (636 aa)
	CBG07180	Protein CBG07180. (260 aa)
	CBG07135	Protein CBG07135. (323 aa)
	CBG07478	Protein CBG07478. (207 aa)
	CBG07477	Protein CBG07477. (580 aa)
	CBG07476	Protein CBG07476. (346 aa)
	CBG07475	Protein CBG07475. (320 aa)
	CBG07474	Protein CBG07474. (381 aa)
	CBG07472	Protein CBG07472. (459 aa)
	CBG08513	Protein CBG08513. (1321 aa)
	CBG08722	Protein CBG08722. (377 aa)
	CBG08732	Protein CBG08732. (351 aa)
	CBG09885	Protein CBG09885. (68 aa)
	bath-43	Protein CBR-BATH-43. (459 aa)
	CBG11699	Protein CBG11699. (365 aa)
	bath-44	Protein CBR-BATH-44. (389 aa)
	egrh-3	Protein CBR-EGRH-3. (299 aa)
	ceh-18	POU domain protein. (545 aa)
	CBG15828	Protein CBG15828. (1458 aa)
	bath-41	Protein CBR-BATH-41. (419 aa)
	CBG17043	Protein CBG17043. (260 aa)
	sptf-3	Protein CBR-SPTF-3. (374 aa)
	CBG21582	Protein CBG21582. (140 aa)
	klf-1	Protein CBR-KLF-1. (558 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG02127	CBG07478	A8WS13	A8X4P5	Protein CBG02127.	Protein CBG07478.	0.419
CBG02127	CBG08732	A8WS13	A8X795	Protein CBG02127.	Protein CBG08732.	0.536
CBG02127	CBG09885	A8WS13	A8X9W4	Protein CBG02127.	Protein CBG09885.	0.536
CBG02127	bath-43	A8WS13	A8X9W5	Protein CBG02127.	Protein CBR-BATH-43.	0.536
CBG05518	CBG07478	A8X024	A8X4P5	Protein CBG05518.	Protein CBG07478.	0.446
CBG05518	CBG21582	A8X024	A8Y0F4	Protein CBG05518.	Protein CBG21582.	0.744
CBG05518	ceh-18	A8X024	A8XJQ0	Protein CBG05518.	POU domain protein.	0.650
CBG07472	CBG08732	A8X4Q1	A8X795	Protein CBG07472.	Protein CBG08732.	0.536
CBG07472	CBG09885	A8X4Q1	A8X9W4	Protein CBG07472.	Protein CBG09885.	0.536
CBG07472	bath-43	A8X4Q1	A8X9W5	Protein CBG07472.	Protein CBR-BATH-43.	0.536
CBG07472	egrh-3	A8X4Q1	A8XJ24	Protein CBG07472.	Protein CBR-EGRH-3.	0.405
CBG07474	CBG08732	A8X4P9	A8X795	Protein CBG07474.	Protein CBG08732.	0.536
CBG07474	CBG09885	A8X4P9	A8X9W4	Protein CBG07474.	Protein CBG09885.	0.536
CBG07474	bath-43	A8X4P9	A8X9W5	Protein CBG07474.	Protein CBR-BATH-43.	0.536
CBG07475	CBG08732	A8X4P8	A8X795	Protein CBG07475.	Protein CBG08732.	0.536
CBG07475	CBG09885	A8X4P8	A8X9W4	Protein CBG07475.	Protein CBG09885.	0.536
CBG07475	bath-43	A8X4P8	A8X9W5	Protein CBG07475.	Protein CBR-BATH-43.	0.536
CBG07476	CBG08722	A8X4P7	A8X789	Protein CBG07476.	Protein CBG08722.	0.420
CBG07476	CBG08732	A8X4P7	A8X795	Protein CBG07476.	Protein CBG08732.	0.536
CBG07476	CBG09885	A8X4P7	A8X9W4	Protein CBG07476.	Protein CBG09885.	0.536