STRINGSTRING
ampd-1 ampd-1 CBG06032 CBG06032 CBG14916 CBG14916 pde-6 pde-6 pde-1 pde-1 CBG23391 CBG23391
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ampd-1Protein CBG02349. (1030 aa)
CBG06032Protein CBG06032. (342 aa)
CBG14916Protein CBG14916. (185 aa)
pde-6Phosphodiesterase. (705 aa)
pde-1Phosphodiesterase. (662 aa)
CBG23391Protein CBG23391. (690 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.