STRINGSTRING
CBG23561 CBG23561 gtf-2f2 gtf-2f2 taf-5 taf-5 CBG00192 CBG00192 CBG00531 CBG00531 taf-8 taf-8 gtf-2h1 gtf-2h1 taf-13 taf-13 gtf-2e2 gtf-2e2 taf-7.2 taf-7.2 gtf-2f1 gtf-2f1 cdk-7 cdk-7 dyf-18 dyf-18 ttb-1 ttb-1 CBG07847 CBG07847 taf-6.2 taf-6.2 taf-2 taf-2 pqn-51 pqn-51 taf-10 taf-10 CBG08996 CBG08996 tbp-1 tbp-1 gtf-2h3 gtf-2h3 gtf-2h2c gtf-2h2c xpb-1 xpb-1 taf-12 taf-12 taf-1 taf-1 CBG13719 CBG13719 taf-11.1 taf-11.1 gtf-2h5 gtf-2h5 taf-7.1 taf-7.1 xpd-1 xpd-1 CBG16094 CBG16094 CBG15989 CBG15989 taf-3 taf-3 cyh-1 cyh-1 taf-9 taf-9 taf-11.3 taf-11.3 CBG18558 CBG18558 hmg-6 hmg-6 gtf-2a2 gtf-2a2 mnat-1 mnat-1 eri-3 eri-3 taf-4 taf-4 CBG26441 CBG26441
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CBG23561Protein CBG23561. (175 aa)
gtf-2f2Protein CBG23703. (236 aa)
taf-5Protein CBR-TAF-5. (646 aa)
CBG00192Protein CBG00192. (303 aa)
CBG00531Protein CBG00531. (364 aa)
taf-8Protein CBR-TAF-8. (482 aa)
gtf-2h1Protein CBG01668. (526 aa)
taf-13Protein CBR-TAF-13. (121 aa)
gtf-2e2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (297 aa)
taf-7.2Protein CBR-TAF-7.2. (245 aa)
gtf-2f1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (483 aa)
cdk-7Protein CBR-CDK-7; Belongs to the protein kinase superfamily. (343 aa)
dyf-18Protein CBR-DYF-18. (325 aa)
ttb-1Protein CBR-TTB-1. (306 aa)
CBG07847Protein CBG07847. (557 aa)
taf-6.2Protein CBR-TAF-6.2. (812 aa)
taf-2Protein CBR-TAF-2. (1090 aa)
pqn-51Protein CBR-PQN-51. (353 aa)
taf-10Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (171 aa)
CBG08996Protein CBG08996. (134 aa)
tbp-1Protein CBR-TBP-1. (337 aa)
gtf-2h3Protein CBG09872. (297 aa)
gtf-2h2cGeneral transcription factor IIH subunit. (376 aa)
xpb-1Protein CBG13269. (800 aa)
taf-12Protein CBR-TAF-12. (330 aa)
taf-1Protein CBR-TAF-1. (1752 aa)
CBG13719General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (482 aa)
taf-11.1Protein CBR-TAF-11.1. (352 aa)
gtf-2h5Protein CBG15257. (72 aa)
taf-7.1Protein CBR-TAF-7.1. (232 aa)
xpd-1Protein CBG15713. (755 aa)
CBG16094Protein CBG16094. (251 aa)
CBG15989Protein CBG15989. (563 aa)
taf-3Protein CBR-TAF-3. (1007 aa)
cyh-1Protein CBR-CYH-1. (320 aa)
taf-9Protein CBR-TAF-9. (184 aa)
taf-11.3Protein CBR-TAF-11.3. (306 aa)
CBG18558Protein CBG18558. (307 aa)
hmg-6Protein CBR-HMG-6. (141 aa)
gtf-2a2Protein CBG20129. (119 aa)
mnat-1Protein CBR-MNAT-1. (343 aa)
eri-3Protein CBR-ERI-3. (577 aa)
taf-4Protein CBR-TAF-4.1. (603 aa)
CBG26441Protein CBG26441. (111 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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