STRINGSTRING
ocr-2 ocr-2 trpa-1 trpa-1 trp-4 trp-4 osm-9 osm-9 deg-1 deg-1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ocr-2Protein CBR-OCR-2. (872 aa)
trpa-1Protein CBR-TRPA-1; Belongs to the transient receptor (TC 1.A.4) family. (1203 aa)
trp-4Protein CBR-TRP-4; Belongs to the transient receptor (TC 1.A.4) family. (2002 aa)
osm-9Protein CBR-OSM-9; Belongs to the transient receptor (TC 1.A.4) family. (940 aa)
deg-1Protein CBR-DEG-1; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family. (787 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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