(15 nodes) Arrestin C-terminal-like domain network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	arrd-5	Protein CBR-ARRD-5. (377 aa)
	arrd-4	Protein CBG01020. (334 aa)
	arrd-2	Protein CBR-ARRD-2. (337 aa)
	arrd-7	Protein CBR-ARRD-7. (439 aa)
	arrd-8	Protein CBR-ARRD-8. (383 aa)
	arrd-10	Protein CBR-ARRD-10. (435 aa)
	arrd-15	Protein CBR-ARRD-15. (343 aa)
	arrd-24	Protein CBR-ARRD-24. (375 aa)
	CBG07318	Protein CBG07318. (588 aa)
	arrd-25	Protein CBG07317. (584 aa)
	arrd-23	Protein CBR-ARRD-23. (462 aa)
	arrd-28	Protein CBG17174. (650 aa)
	CBG20688	Protein CBG20688. (420 aa)
	arrd-14	Protein CBR-ARRD-14. (352 aa)
	arrd-26	Protein CBG22518. (201 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG07318	CBG20688	A8X509	A8XYD6	Protein CBG07318.	Protein CBG20688.	0.625
CBG07318	arrd-10	A8X509	A8WTK5	Protein CBG07318.	Protein CBR-ARRD-10.	0.625
CBG07318	arrd-14	A8X509	A8XYD8	Protein CBG07318.	Protein CBR-ARRD-14.	0.630
CBG07318	arrd-15	A8X509	A8X383	Protein CBG07318.	Protein CBR-ARRD-15.	0.630
CBG07318	arrd-2	A8X509	A8WP37	Protein CBG07318.	Protein CBR-ARRD-2.	0.630
CBG07318	arrd-23	A8X509	A8XK70	Protein CBG07318.	Protein CBR-ARRD-23.	0.630
CBG07318	arrd-24	A8X509	A8X4Z9	Protein CBG07318.	Protein CBR-ARRD-24.	0.499
CBG07318	arrd-26	A8X509	A8Y2G4	Protein CBG07318.	Protein CBG22518.	0.630
CBG07318	arrd-28	A8X509	A8XQM4	Protein CBG07318.	Protein CBG17174.	0.630
CBG07318	arrd-4	A8X509	A8WP35	Protein CBG07318.	Protein CBG01020.	0.549
CBG07318	arrd-5	A8X509	A8WP32	Protein CBG07318.	Protein CBR-ARRD-5.	0.630
CBG07318	arrd-7	A8X509	A8WP41	Protein CBG07318.	Protein CBR-ARRD-7.	0.549
CBG07318	arrd-8	A8X509	A8WP43	Protein CBG07318.	Protein CBR-ARRD-8.	0.630
CBG20688	CBG07318	A8XYD6	A8X509	Protein CBG20688.	Protein CBG07318.	0.625
CBG20688	arrd-10	A8XYD6	A8WTK5	Protein CBG20688.	Protein CBR-ARRD-10.	0.741
CBG20688	arrd-15	A8XYD6	A8X383	Protein CBG20688.	Protein CBR-ARRD-15.	0.743
CBG20688	arrd-23	A8XYD6	A8XK70	Protein CBG20688.	Protein CBR-ARRD-23.	0.743
CBG20688	arrd-25	A8XYD6	A8X510	Protein CBG20688.	Protein CBG07317.	0.625
CBG20688	arrd-26	A8XYD6	A8Y2G4	Protein CBG20688.	Protein CBG22518.	0.744
CBG20688	arrd-28	A8XYD6	A8XQM4	Protein CBG20688.	Protein CBG17174.	0.743