(22 nodes) Mixed, incl. Lipase EstA/Esterase EstB, and ATP-dependent chromatin remodeler activity network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG24706	Protein CBG24706. (133 aa)
	CBG24944	Protein CBG24944. (134 aa)
	CBG01267	Protein CBG01267. (288 aa)
	CBG05119	Protein CBG05119. (345 aa)
	CBG05419	Protein CBG05419. (1250 aa)
	CBG05499	Protein CBG05499. (146 aa)
	CBG06218	Protein CBG06218. (216 aa)
	lips-6.1	Protein CBG06208. (375 aa)
	CBG05958	Protein CBG05958. (147 aa)
	CBG06488	Protein CBG06488. (325 aa)
	pqn-60	Protein CBG08422. (147 aa)
	CBG10131	Protein CBG10131. (344 aa)
	CBG10132	Protein CBG10132. (333 aa)
	fil-1	Protein CBR-FIL-1. (309 aa)
	CBG13225	Protein CBG13225. (1082 aa)
	nhr-35	Protein CBR-NHR-35. (488 aa)
	CBG16432	Protein CBG16432. (407 aa)
	CBG20530	Protein CBG20530; Belongs to the protein kinase superfamily. (345 aa)
	CBG21079	Protein CBG21079. (362 aa)
	Cbr-pqn-98	Protein CBR-PQN-98. (144 aa)
	dod-6.1	Protein CBG25878. (60 aa)
	CBG27166	Protein CBG27166. (233 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG01267	CBG05958	A8WPZ9	A8X186	Protein CBG01267.	Protein CBG05958.	0.453
CBG01267	CBG21079	A8WPZ9	A8XZ90	Protein CBG01267.	Protein CBG21079.	0.452
CBG05119	CBG05499	A8WZ77	A8X009	Protein CBG05119.	Protein CBG05499.	0.499
CBG05119	CBG05958	A8WZ77	A8X186	Protein CBG05119.	Protein CBG05958.	0.665
CBG05119	CBG06218	A8WZ77	A8X0M3	Protein CBG05119.	Protein CBG06218.	0.647
CBG05119	CBG20530	A8WZ77	A8XY06	Protein CBG05119.	Protein CBG20530; Belongs to the protein kinase superfamily.	0.643
CBG05119	CBG21079	A8WZ77	A8XZ90	Protein CBG05119.	Protein CBG21079.	0.665
CBG05119	CBG24944	A8WZ77	A8WLT8	Protein CBG05119.	Protein CBG24944.	0.499
CBG05119	Cbr-pqn-98	A8WZ77	A8Y2H0	Protein CBG05119.	Protein CBR-PQN-98.	0.502
CBG05119	pqn-60	A8WZ77	A8X6I6	Protein CBG05119.	Protein CBG08422.	0.502
CBG05419	CBG16432	A8WZU3	A8XP26	Protein CBG05419.	Protein CBG16432.	0.671
CBG05499	CBG05119	A8X009	A8WZ77	Protein CBG05499.	Protein CBG05119.	0.499
CBG05499	CBG06218	A8X009	A8X0M3	Protein CBG05499.	Protein CBG06218.	0.632
CBG05499	CBG10131	A8X009	A8XAG5	Protein CBG05499.	Protein CBG10131.	0.504
CBG05499	CBG10132	A8X009	A8XAG6	Protein CBG05499.	Protein CBG10132.	0.504
CBG05499	CBG16432	A8X009	A8XP26	Protein CBG05499.	Protein CBG16432.	0.889
CBG05499	CBG20530	A8X009	A8XY06	Protein CBG05499.	Protein CBG20530; Belongs to the protein kinase superfamily.	0.635
CBG05499	Cbr-pqn-98	A8X009	A8Y2H0	Protein CBG05499.	Protein CBR-PQN-98.	0.432
CBG05499	pqn-60	A8X009	A8X6I6	Protein CBG05499.	Protein CBG08422.	0.432
CBG05958	CBG01267	A8X186	A8WPZ9	Protein CBG05958.	Protein CBG01267.	0.453