61 items (Caenorhabditis briggsae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG24391	Protein CBG24391. (130 aa)
	CBG00835	Protein CBG00835. (208 aa)
	CBG00836	Protein CBG00836. (85 aa)
	CBG01108	Protein CBG01108. (162 aa)
	CBG01247	Protein CBG01247. (352 aa)
	CBG01262	Protein CBG01262. (313 aa)
	CBG01338	Protein CBG01338. (345 aa)
	nhr-222	Protein CBR-NHR-222. (342 aa)
	nhr-55	Protein CBR-NHR-55. (217 aa)
	CBG01357	Protein CBG01357. (293 aa)
	nhr-16	Protein CBG01395. (366 aa)
	CBG01402	Protein CBG01402. (365 aa)
	nhr-2	Protein CBR-NHR-2. (502 aa)
	unc-39	Protein CBR-UNC-39. (315 aa)
	CBG04783	Protein CBG04783. (352 aa)
	nhr-233.2	Protein CBR-NHR-233. (331 aa)
	nhr-30	Protein CBR-NHR-30. (395 aa)
	CBG04942	Protein CBG04942. (326 aa)
	CBG04944	Protein CBG04944. (405 aa)
	ceh-28	Protein CBR-CEH-28. (100 aa)
	nhr-7	Protein CBR-NHR-7. (537 aa)
	CBG06379	Protein CBG06379. (380 aa)
	nhr-131.1	Protein CBR-NHR-131. (267 aa)
	nhr-159	Protein CBR-NHR-159. (293 aa)
	CBG06503	Protein CBG06503. (327 aa)
	CBG06625	Protein CBG06625. (246 aa)
	CBG06735	Protein CBG06735. (276 aa)
	nhr-26	Protein CBR-NHR-26. (358 aa)
	CBG08819	Protein CBG08819. (240 aa)
	CBG08820	Protein CBG08820. (157 aa)
	CBG08835	Protein CBG08835. (153 aa)
	nhr-192	Protein CBG10264. (352 aa)
	nhr-237	Protein CBR-NHR-237. (338 aa)
	CBG10360	Protein CBG10360. (392 aa)
	nhr-132	Protein CBR-NHR-132. (277 aa)
	nhr-21	Protein CBR-NHR-21. (437 aa)
	ets-8	Protein CBR-ETS-8. (169 aa)
	lin-1	Protein CBR-ELK-2. (411 aa)
	ets-5	Protein CBR-ETS-5. (155 aa)
	nhr-97	Protein CBR-NHR-97. (444 aa)
	CBG16291	Protein CBG16291. (347 aa)
	CBG16982	Protein CBG16982. (435 aa)
	npax-3	Protein CBR-NPAX-3. (206 aa)
	nhr-135	Protein CBR-NHR-135. (367 aa)
	hlh-10	Protein CBR-HLH-10. (271 aa)
	CBG19535	Protein CBG19535. (464 aa)
	CBG19536	Protein CBG19536. (384 aa)
	npax-4	Protein CBR-NPAX-4. (218 aa)
	nhr-270	Protein CBR-NHR-270. (353 aa)
	nhr-38	Protein CBR-NHR-38. (331 aa)
	CBG22857	Protein CBG22857. (272 aa)
	CBG22881	Protein CBG22881. (271 aa)
	CBG22886	Protein CBG22886. (236 aa)
	CBG22888	Protein CBG22888. (296 aa)
	Cbr-nhr-283	Protein CBR-NHR-283. (330 aa)
	CBG25628	Protein CBG25628. (134 aa)
	CBG27350	Protein CBG27350. (263 aa)
	nhr-204	Protein CBG26996. (400 aa)
	CBG25671	Protein CBG25671. (77 aa)
	CBG20719	Protein CBG20719. (81 aa)
	Cbr-pax-2	Protein CBR-PAX-2, isoform a. (304 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG00835	CBG01247	A8WNY5	A8WPY1	Protein CBG00835.	Protein CBG01247.	0.547
CBG00835	CBG01262	A8WNY5	A8WPZ4	Protein CBG00835.	Protein CBG01262.	0.521
CBG00835	CBG01338	A8WNY5	A8WQ63	Protein CBG00835.	Protein CBG01338.	0.509
CBG00835	CBG01357	A8WNY5	A8WQ82	Protein CBG00835.	Protein CBG01357.	0.550
CBG00835	CBG01402	A8WNY5	A8WQC0	Protein CBG00835.	Protein CBG01402.	0.546
CBG00835	CBG04783	A8WNY5	A8WYG6	Protein CBG00835.	Protein CBG04783.	0.540
CBG00835	CBG04942	A8WNY5	A8WYV1	Protein CBG00835.	Protein CBG04942.	0.542
CBG00835	CBG04944	A8WNY5	A8WYV3	Protein CBG00835.	Protein CBG04944.	0.492
CBG00835	CBG06379	A8WNY5	A8X237	Protein CBG00835.	Protein CBG06379.	0.524
CBG00835	CBG06503	A8WNY5	A8X2D7	Protein CBG00835.	Protein CBG06503.	0.489
CBG00835	CBG06625	A8WNY5	A8X2P7	Protein CBG00835.	Protein CBG06625.	0.551
CBG00835	CBG06735	A8WNY5	A8X2Z1	Protein CBG00835.	Protein CBG06735.	0.552
CBG00835	CBG10360	A8WNY5	A8XB14	Protein CBG00835.	Protein CBG10360.	0.518
CBG00835	CBG16291	A8WNY5	A8XNQ6	Protein CBG00835.	Protein CBG16291.	0.537
CBG00835	CBG16982	A8WNY5	A8XQ70	Protein CBG00835.	Protein CBG16982.	0.548
CBG00835	CBG19535	A8WNY5	A8XVU5	Protein CBG00835.	Protein CBG19535.	0.534
CBG00835	CBG19536	A8WNY5	A8XVU6	Protein CBG00835.	Protein CBG19536.	0.521
CBG00835	CBG20719	A8WNY5	E3CU80	Protein CBG00835.	Protein CBG20719.	0.544
CBG00835	CBG22857	A8WNY5	A8Y381	Protein CBG00835.	Protein CBG22857.	0.545
CBG00835	CBG22881	A8WNY5	A8Y3A3	Protein CBG00835.	Protein CBG22881.	0.554