(5 nodes) Interneuron axon guidance, and Malate-aspartate shuttle network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG24187	Protein CBG24187; Belongs to the mitochondrial carrier (TC 2.A.29) family. (690 aa)
	glt-5	Amino acid transporter. (490 aa)
	Cbr-fmi-1	Protein CBR-FMI-1. (2592 aa)
	CBG14348	Protein CBG14348. (673 aa)
	CBG29115	Protein CBG29115. (733 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG24187	CBG29115	A8WK59	H8WGX6	Protein CBG24187; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Protein CBG29115.	0.564
CBG24187	Cbr-fmi-1	A8WK59	A8X925	Protein CBG24187; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Protein CBR-FMI-1.	0.564
CBG24187	glt-5	A8WK59	A8WP07	Protein CBG24187; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Amino acid transporter.	0.875
CBG29115	CBG24187	H8WGX6	A8WK59	Protein CBG29115.	Protein CBG24187; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.564
Cbr-fmi-1	CBG24187	A8X925	A8WK59	Protein CBR-FMI-1.	Protein CBG24187; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.564
glt-5	CBG24187	A8WP07	A8WK59	Amino acid transporter.	Protein CBG24187; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.875