(10 nodes) Mixed, incl. Phase 1 - inactivation of fast Na+ channels, and PAC motif network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG24152	Protein CBG24152. (266 aa)
	ncs-7	Protein CBG01881. (241 aa)
	abts-3	Protein CBR-ABTS-3. (1016 aa)
	CBG04028	Protein CBG04028. (3456 aa)
	shl-1	Protein CBG05460; Belongs to the potassium channel family. (596 aa)
	egl-2	Protein CBR-EGL-2. (950 aa)
	nhx-8	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. (665 aa)
	spe-44	Protein CBR-TAG-347. (455 aa)
	lst-5	Protein CBG11205. (267 aa)
	CBG12701	Protein CBG12701. (170 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG12701	CBG24152	A8XGD6	A8WK33	Protein CBG12701.	Protein CBG24152.	0.452
CBG12701	shl-1	A8XGD6	A8WZX5	Protein CBG12701.	Protein CBG05460; Belongs to the potassium channel family.	0.452
CBG24152	CBG12701	A8WK33	A8XGD6	Protein CBG24152.	Protein CBG12701.	0.452
CBG24152	abts-3	A8WK33	A8WU00	Protein CBG24152.	Protein CBR-ABTS-3.	0.740
CBG24152	lst-5	A8WK33	A8XCQ0	Protein CBG24152.	Protein CBG11205.	0.748
CBG24152	nhx-8	A8WK33	A8X5H4	Protein CBG24152.	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.	0.667
CBG24152	shl-1	A8WK33	A8WZX5	Protein CBG24152.	Protein CBG05460; Belongs to the potassium channel family.	0.742
CBG24152	spe-44	A8WK33	A8X8B4	Protein CBG24152.	Protein CBR-TAG-347.	0.670
abts-3	CBG24152	A8WU00	A8WK33	Protein CBR-ABTS-3.	Protein CBG24152.	0.740
abts-3	lst-5	A8WU00	A8XCQ0	Protein CBR-ABTS-3.	Protein CBG11205.	0.685
abts-3	nhx-8	A8WU00	A8X5H4	Protein CBR-ABTS-3.	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.	0.642
abts-3	shl-1	A8WU00	A8WZX5	Protein CBR-ABTS-3.	Protein CBG05460; Belongs to the potassium channel family.	0.742
abts-3	spe-44	A8WU00	A8X8B4	Protein CBR-ABTS-3.	Protein CBR-TAG-347.	0.632
egl-2	shl-1	A8X2Q3	A8WZX5	Protein CBR-EGL-2.	Protein CBG05460; Belongs to the potassium channel family.	0.617
lst-5	CBG24152	A8XCQ0	A8WK33	Protein CBG11205.	Protein CBG24152.	0.748
lst-5	abts-3	A8XCQ0	A8WU00	Protein CBG11205.	Protein CBR-ABTS-3.	0.685
lst-5	nhx-8	A8XCQ0	A8X5H4	Protein CBG11205.	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.	0.633
lst-5	shl-1	A8XCQ0	A8WZX5	Protein CBG11205.	Protein CBG05460; Belongs to the potassium channel family.	0.737
lst-5	spe-44	A8XCQ0	A8X8B4	Protein CBG11205.	Protein CBR-TAG-347.	0.637
ncs-7	shl-1	A8WRH5	A8WZX5	Protein CBG01881.	Protein CBG05460; Belongs to the potassium channel family.	0.966