(53 nodes) Mixed, incl. Fatty acid metabolism, and Fatty acid desaturase network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG23894	Protein CBG23894. (608 aa)
	CBG24287	Protein CBG24287. (460 aa)
	fat-5	Protein CBR-FAT-5; Belongs to the fatty acid desaturase type 1 family. (333 aa)
	elo-2	Elongation of very long chain fatty acids protein. (271 aa)
	fat-1	Protein CBR-FAT-1. (399 aa)
	fat-2	Protein CBR-FAT-2. (376 aa)
	CBG02453	Protein CBG02453. (481 aa)
	fat-3	Protein CBR-FAT-3. (443 aa)
	fat-4	Protein CBR-FAT-4. (447 aa)
	nhr-49	Protein CBR-NHR-49. (486 aa)
	paqr-2	Protein CBR-PAQR-2. (602 aa)
	paqr-1	Progestin and adipoQ receptor-like protein 1; Probable receptor, which may be involved in metabolic pathways that regulate lipid metabolism such as fatty acid oxidation. Belongs to the ADIPOR family. (423 aa)
	fat-6	Protein CBR-FAT-6; Belongs to the fatty acid desaturase type 1 family. (338 aa)
	elo-3	Elongation of very long chain fatty acids protein. (319 aa)
	cgp-1	Protein CBR-CGP-1. (617 aa)
	ceeh-2	Protein CBR-CEEH-2. (355 aa)
	elo-4	Elongation of very long chain fatty acids protein. (292 aa)
	CBG10258	Protein CBG10258. (464 aa)
	lbp-7	Protein CBR-LBP-7; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (137 aa)
	CBG13171	Protein CBG13171. (596 aa)
	sbp-1	Protein CBR-SBP-1. (1142 aa)
	CBG14347	Protein CBG14347. (115 aa)
	ncr-1	Protein CBR-NCR-1. (1431 aa)
	Cbr-elo-8	Elongation of very long chain fatty acids protein. (291 aa)
	nhr-80	Protein CBR-NHR-80. (489 aa)
	mrps-18a	Protein CBR-MRPS-18A. (945 aa)
	ncr-2	Protein CBR-NCR-2. (1222 aa)
	CBG17045	Protein CBG17045; Belongs to the fatty acid desaturase type 1 family. (338 aa)
	ldp-1	Protein CBG17873. (425 aa)
	acs-2	Protein CBR-ACS-2. (618 aa)
	fld-1	Protein CBG18826. (352 aa)
	lipl-4	Lipase; Belongs to the AB hydrolase superfamily. Lipase family. (423 aa)
	CBG19039	Protein CBG19039. (304 aa)
	CBG19546	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (438 aa)
	elo-6	Elongation of very long chain fatty acids protein. (272 aa)
	elo-5	Elongation of very long chain fatty acids protein. (274 aa)
	elo-1	Elongation of very long chain fatty acids protein. (290 aa)
	elo-7	Elongation of very long chain fatty acids protein. (308 aa)
	scp-1	Protein CBR-SCP-1. (1102 aa)
	heh-1	Protein CBR-HEH-1. (141 aa)
	elo-9	Elongation of very long chain fatty acids protein. (286 aa)
	paqr-3	Protein CBR-PAQR-3. (326 aa)
	CBG22126	Protein CBG22126. (589 aa)
	spe-48	Protein CBG22135. (329 aa)
	CBG22146	Protein CBG22146. (569 aa)
	CBG22148	Protein CBG22148. (327 aa)
	CBG22168	Protein CBG22168. (428 aa)
	tub-2	Protein CBR-TUB-2; Belongs to the TUB family. (895 aa)
	CBG22223	Protein CBG22223. (150 aa)
	CBG22229	Protein CBG22229. (330 aa)
	CBG25900	Protein CBG25900. (278 aa)
	CBG25187	Protein CBG25187. (84 aa)
	mdt-15	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). Required [...] (785 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG02453	sbp-1	A8WUA5	A8XHH0	Protein CBG02453.	Protein CBR-SBP-1.	0.615
CBG10258	elo-1	A8XAR7	A8XWY4	Protein CBG10258.	Elongation of very long chain fatty acids protein.	0.539
CBG10258	elo-2	A8XAR7	A8WN34	Protein CBG10258.	Elongation of very long chain fatty acids protein.	0.630
CBG10258	elo-7	A8XAR7	A8XWY6	Protein CBG10258.	Elongation of very long chain fatty acids protein.	0.539
CBG10258	fat-1	A8XAR7	A8WQT8	Protein CBG10258.	Protein CBR-FAT-1.	0.713
CBG10258	fat-2	A8XAR7	A8WQT9	Protein CBG10258.	Protein CBR-FAT-2.	0.735
CBG14347	acs-2	A8XJT3	A8XTN8	Protein CBG14347.	Protein CBR-ACS-2.	0.633
CBG17045	acs-2	A8XQD0	A8XTN8	Protein CBG17045; Belongs to the fatty acid desaturase type 1 family.	Protein CBR-ACS-2.	0.424
CBG17045	fat-1	A8XQD0	A8WQT8	Protein CBG17045; Belongs to the fatty acid desaturase type 1 family.	Protein CBR-FAT-1.	0.454
CBG17045	fat-2	A8XQD0	A8WQT9	Protein CBG17045; Belongs to the fatty acid desaturase type 1 family.	Protein CBR-FAT-2.	0.566
CBG17045	fat-5	A8XQD0	A8WL53	Protein CBG17045; Belongs to the fatty acid desaturase type 1 family.	Protein CBR-FAT-5; Belongs to the fatty acid desaturase type 1 family.	0.901
CBG17045	fat-6	A8XQD0	A8X0Q0	Protein CBG17045; Belongs to the fatty acid desaturase type 1 family.	Protein CBR-FAT-6; Belongs to the fatty acid desaturase type 1 family.	0.901
CBG17045	nhr-49	A8XQD0	A8WWW4	Protein CBG17045; Belongs to the fatty acid desaturase type 1 family.	Protein CBR-NHR-49.	0.504
CBG17045	nhr-80	A8XQD0	A8XMM9	Protein CBG17045; Belongs to the fatty acid desaturase type 1 family.	Protein CBR-NHR-80.	0.499
CBG17045	sbp-1	A8XQD0	A8XHH0	Protein CBG17045; Belongs to the fatty acid desaturase type 1 family.	Protein CBR-SBP-1.	0.549
CBG19039	CBG22146	A8XUM6	A8Y1M9	Protein CBG19039.	Protein CBG22146.	0.837
CBG19039	paqr-1	A8XUM6	A8WZU4	Protein CBG19039.	Progestin and adipoQ receptor-like protein 1; Probable receptor, which may be involved in metabolic pathways that regulate lipid metabolism such as fatty acid oxidation. Belongs to the ADIPOR family.	0.643
CBG19039	paqr-2	A8XUM6	A8WZA3	Protein CBG19039.	Protein CBR-PAQR-2.	0.633
CBG19039	paqr-3	A8XUM6	A8Y086	Protein CBG19039.	Protein CBR-PAQR-3.	0.777
CBG19546	elo-4	A8XVV3	A8XAF3	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Elongation of very long chain fatty acids protein.	0.644