(20 nodes) Mostly uncharacterized, incl. Oxaloacetate metabolic process, and Intracellular distribution of mitochondria network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG24775	Protein CBG24775. (209 aa)
	CBG03039	Protein CBG03039. (449 aa)
	CBG02959	Protein CBG02959. (468 aa)
	CBG02941	Protein CBG02941. (319 aa)
	CBG02516	Protein CBG02516. (470 aa)
	CBG02319	Protein CBG02319. (412 aa)
	CBG06269	Protein CBG06269. (118 aa)
	CBG06186	Protein CBG06186. (483 aa)
	CBG09204	Protein CBG09204. (215 aa)
	CBG09939	Protein CBG09939. (116 aa)
	CBG10047	Protein CBG10047. (320 aa)
	CBG11570	Protein CBG11570. (324 aa)
	CBG12174	Protein CBG12174. (339 aa)
	CBG12856	Protein CBG12856. (332 aa)
	CBG17052	Protein CBG17052. (400 aa)
	CBG17959	Protein CBG17959. (265 aa)
	CBG19746	Armadillo repeat-containing protein 1. (303 aa)
	CBG20001	Protein CBG20001. (235 aa)
	CBG22268	Protein CBG22268. (269 aa)
	CBG23267	Protein CBG23267. (418 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG02319	CBG02516	A8WUL5	A8WU49	Protein CBG02319.	Protein CBG02516.	0.643
CBG02319	CBG02941	A8WUL5	A8WT59	Protein CBG02319.	Protein CBG02941.	0.643
CBG02319	CBG02959	A8WUL5	A8WT42	Protein CBG02319.	Protein CBG02959.	0.642
CBG02319	CBG03039	A8WUL5	A8WSY0	Protein CBG02319.	Protein CBG03039.	0.643
CBG02319	CBG06186	A8WUL5	A8X0Q3	Protein CBG02319.	Protein CBG06186.	0.643
CBG02319	CBG06269	A8WUL5	A8X0H6	Protein CBG02319.	Protein CBG06269.	0.643
CBG02319	CBG09204	A8WUL5	A8X8C8	Protein CBG02319.	Protein CBG09204.	0.633
CBG02319	CBG09939	A8WUL5	A8XA00	Protein CBG02319.	Protein CBG09939.	0.643
CBG02319	CBG10047	A8WUL5	A8XA92	Protein CBG02319.	Protein CBG10047.	0.643
CBG02319	CBG11570	A8WUL5	A8XDI6	Protein CBG02319.	Protein CBG11570.	0.643
CBG02319	CBG12174	A8WUL5	A8XF26	Protein CBG02319.	Protein CBG12174.	0.643
CBG02319	CBG12856	A8WUL5	A8XFR6	Protein CBG02319.	Protein CBG12856.	0.643
CBG02319	CBG17052	A8WUL5	A8XQC5	Protein CBG02319.	Protein CBG17052.	0.643
CBG02319	CBG17959	A8WUL5	A8XSN8	Protein CBG02319.	Protein CBG17959.	0.643
CBG02319	CBG19746	A8WUL5	A8XWE8	Protein CBG02319.	Armadillo repeat-containing protein 1.	0.643
CBG02319	CBG20001	A8WUL5	A8XWW7	Protein CBG02319.	Protein CBG20001.	0.643
CBG02319	CBG22268	A8WUL5	A8Y1X9	Protein CBG02319.	Protein CBG22268.	0.625
CBG02319	CBG23267	A8WUL5	A8Y4B6	Protein CBG02319.	Protein CBG23267.	0.643
CBG02319	CBG24775	A8WUL5	A8WLG4	Protein CBG02319.	Protein CBG24775.	0.642
CBG02516	CBG02319	A8WU49	A8WUL5	Protein CBG02516.	Protein CBG02319.	0.643