STRINGSTRING
ctns-1 ctns-1 lmp-2 lmp-2 laat-1 laat-1 scav-3 scav-3 rnst-2 rnst-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ctns-1Cystinosin homolog; Thought to transport cystine out of lysosomes. May play a role in the degradation of engulfed apoptotic cells (By similarity). Belongs to the cystinosin family. (403 aa)
lmp-2Protein CBR-LMP-2. (286 aa)
laat-1Protein CBG07028. (310 aa)
scav-3Protein CBR-SCAV-3; Belongs to the CD36 family. (527 aa)
rnst-2Protein CBG17875; Belongs to the RNase T2 family. (243 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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