(20 nodes) Mixed, incl. External side of plasma membrane, and Cytochrome b561/Cytochrome b reductase 1-like network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	clec-149	Protein CBR-CLEC-149. (316 aa)
	CBG24478	Protein CBG24478. (262 aa)
	CBG02142	Sulfhydryl oxidase. (590 aa)
	CBG02648	Protein CBG02648. (319 aa)
	clec-66	Protein CBR-CLEC-66. (375 aa)
	clec-264	Protein CBR-CLEC-264. (389 aa)
	CBG04603	Protein CBG04603. (377 aa)
	valv-1	Protein CBR-VALV-1. (84 aa)
	CBG08803	Protein CBG08803. (256 aa)
	CBG08815	Protein CBG08815. (197 aa)
	clec-41	Protein CBR-CLEC-41. (546 aa)
	hecw-1	Protein CBR-HECW-1. (920 aa)
	Cbr-clec-5	Protein CBR-CLEC-5. (422 aa)
	CBG10311	Protein CBG10311. (424 aa)
	CBG11499	Protein CBG11499. (495 aa)
	clec-83	Protein CBG13535. (243 aa)
	clec-160	C-type lectin protein 160. (635 aa)
	CBG17853	Protein CBG17853. (83 aa)
	CBG26930	Protein CBG26930. (317 aa)
	CBG26631	Protein CBG26631. (150 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG02142	clec-41	A8WS21	A8X943	Sulfhydryl oxidase.	Protein CBR-CLEC-41.	0.628
CBG02142	clec-66	A8WS21	A8WX43	Sulfhydryl oxidase.	Protein CBR-CLEC-66.	0.736
CBG02648	CBG08803	A8WTU2	A8X7F4	Protein CBG02648.	Protein CBG08803.	0.743
CBG02648	CBG11499	A8WTU2	A8XCV1	Protein CBG02648.	Protein CBG11499.	0.744
CBG02648	CBG24478	A8WTU2	A8WKT0	Protein CBG02648.	Protein CBG24478.	0.646
CBG02648	CBG26631	A8WTU2	B6ILK2	Protein CBG02648.	Protein CBG26631.	0.749
CBG02648	CBG26930	A8WTU2	B6IH81	Protein CBG02648.	Protein CBG26930.	0.625
CBG02648	clec-264	A8WTU2	A8WXL6	Protein CBG02648.	Protein CBR-CLEC-264.	0.741
CBG02648	clec-41	A8WTU2	A8X943	Protein CBG02648.	Protein CBR-CLEC-41.	0.626
CBG02648	clec-83	A8WTU2	A8XI45	Protein CBG02648.	Protein CBG13535.	0.643
CBG02648	valv-1	A8WTU2	A8X1G4	Protein CBG02648.	Protein CBR-VALV-1.	0.690
CBG04603	clec-41	A8WY13	A8X943	Protein CBG04603.	Protein CBR-CLEC-41.	0.629
CBG08803	CBG02648	A8X7F4	A8WTU2	Protein CBG08803.	Protein CBG02648.	0.743
CBG08803	CBG11499	A8X7F4	A8XCV1	Protein CBG08803.	Protein CBG11499.	0.742
CBG08803	CBG24478	A8X7F4	A8WKT0	Protein CBG08803.	Protein CBG24478.	0.643
CBG08803	CBG26631	A8X7F4	B6ILK2	Protein CBG08803.	Protein CBG26631.	0.742
CBG08803	CBG26930	A8X7F4	B6IH81	Protein CBG08803.	Protein CBG26930.	0.569
CBG08803	clec-264	A8X7F4	A8WXL6	Protein CBG08803.	Protein CBR-CLEC-264.	0.685
CBG08803	clec-41	A8X7F4	A8X943	Protein CBG08803.	Protein CBR-CLEC-41.	0.564
CBG08803	clec-83	A8X7F4	A8XI45	Protein CBG08803.	Protein CBG13535.	0.641