(62 nodes) Mixed, incl. Ion transport by P-type ATPases, and acyl-CoA hydrolase activity network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG23873	Protein CBG23873; Belongs to the CDC50/LEM3 family. (361 aa)
	chat-1	Protein CBR-CHAT-1; Belongs to the CDC50/LEM3 family. (350 aa)
	col-79	Protein CBR-COL-79. (282 aa)
	tat-4	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1235 aa)
	Cbr-tat-4.2	Protein CBR-TAT-4.2. (319 aa)
	CBG02480	Protein CBG02480. (148 aa)
	CBG02443	Protein CBG02443. (310 aa)
	mca-3	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1159 aa)
	tbc-3	Protein CBG03461. (527 aa)
	CBG03940	Protein CBG03940. (384 aa)
	CBG04043	Protein CBG04043. (115 aa)
	CBG04045	Protein CBG04045. (159 aa)
	CBG04103	Protein CBG04103. (451 aa)
	nkb-1	Protein CBR-NKB-1. (319 aa)
	CBG07159	Protein CBG07159. (448 aa)
	nkb-3	Probable sodium/potassium-transporting ATPase subunit beta-3; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. The beta subunit regulates, through assembly of alpha/beta heterodimers, the number of sodium pumps transported to the plasma membrane. Implicated in genomic response to various soil bacteria that affects fitness, lifespan and brood size (By similarity). (326 aa)
	abhd-3.2	Protein CBG08080. (375 aa)
	CBG08105	Protein CBG08105. (210 aa)
	CBG08211	Protein CBG08211. (342 aa)
	ath-1	Protein CBR-ATH-1. (266 aa)
	catp-1	Protein CBR-CATP-1; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. (1130 aa)
	CBG09010	Protein CBG09010. (1019 aa)
	pqn-68	D-aminoacyl-tRNA deacylase. (150 aa)
	eat-6	Sodium/potassium-transporting ATPase subunit alpha. (1029 aa)
	CBG09854	Phospholipase B-like; Putative phospholipase. (582 aa)
	CBG10435	Protein CBG10435. (466 aa)
	CBG10451	Protein CBG10451. (415 aa)
	CBG10452	Protein CBG10452. (428 aa)
	CBG10453	Protein CBG10453. (428 aa)
	CBG10454	Protein CBG10454. (432 aa)
	CBG10455	Protein CBG10455. (252 aa)
	tat-2	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1526 aa)
	tat-1	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1218 aa)
	CBG12426	Protein CBG12426. (492 aa)
	CBG12559	Protein CBG12559. (469 aa)
	mib-1	Protein CBR-MIB-1. (766 aa)
	ipla-1	Protein CBR-IPLA-1. (750 aa)
	CBG13798	Protein CBG13798. (727 aa)
	CBG13831	Protein CBG13831. (421 aa)
	gpcp-1	Protein CBG14135. (616 aa)
	CBG14567	Protein CBG14567. (371 aa)
	CBG16211	Protein CBG16211; Belongs to the CDC50/LEM3 family. (350 aa)
	CBG16566	Protein CBG16566. (513 aa)
	CBG16737	Protein CBG16737. (351 aa)
	tat-5	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1072 aa)
	sca-1	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1081 aa)
	tat-3	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1402 aa)
	CBG18327	Protein CBG18327. (713 aa)
	CBG17998	Protein CBG17998. (291 aa)
	CBG18125	Protein CBG18125. (169 aa)
	sulp-8	Protein CBR-SULP-8. (614 aa)
	CBG19651	Protein CBG19651; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. (1166 aa)
	mca-1	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1259 aa)
	abhd-11.2	Protein CBG20335. (299 aa)
	CBG20828	Protein CBG20828. (288 aa)
	CBG22222	Protein CBG22222. (475 aa)
	mca-2	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1165 aa)
	CBG22797	Protein CBG22797. (293 aa)
	CBG26757	Protein CBG26757. (186 aa)
	CBG26312	Protein CBG26312. (149 aa)
	pad-1	Protein pad-1; Essential for cell patterning during gastrulation. May be involved in protein traffic between late Golgi and early endosomes (By similarity). (2340 aa)
	CBG06228	Protein MON2 homolog; May be required for traffic between late Golgi and early endosomes. (1645 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG02443	CBG04103	A8WUB3	A8WW80	Protein CBG02443.	Protein CBG04103.	0.866
CBG02443	CBG12426	A8WUB3	A8XFE8	Protein CBG02443.	Protein CBG12426.	0.694
CBG02443	CBG12559	A8WUB3	A8XG15	Protein CBG02443.	Protein CBG12559.	0.859
CBG03940	ath-1	A8WVT4	A8X629	Protein CBG03940.	Protein CBR-ATH-1.	0.410
CBG04043	CBG04045	A8WW26	A8WW28	Protein CBG04043.	Protein CBG04045.	0.464
CBG04043	CBG26757	A8WW26	B6IED2	Protein CBG04043.	Protein CBG26757.	0.439
CBG04043	pad-1	A8WW26	Q5WNI9	Protein CBG04043.	Protein pad-1; Essential for cell patterning during gastrulation. May be involved in protein traffic between late Golgi and early endosomes (By similarity).	0.494
CBG04043	tat-5	A8WW26	A8XQ33	Protein CBG04043.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.439
CBG04045	CBG04043	A8WW28	A8WW26	Protein CBG04045.	Protein CBG04043.	0.464
CBG04045	CBG26757	A8WW28	B6IED2	Protein CBG04045.	Protein CBG26757.	0.439
CBG04045	pad-1	A8WW28	Q5WNI9	Protein CBG04045.	Protein pad-1; Essential for cell patterning during gastrulation. May be involved in protein traffic between late Golgi and early endosomes (By similarity).	0.494
CBG04045	tat-5	A8WW28	A8XQ33	Protein CBG04045.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.439
CBG04103	CBG02443	A8WW80	A8WUB3	Protein CBG04103.	Protein CBG02443.	0.866
CBG06228	CBG26757	Q61SD1	B6IED2	Protein MON2 homolog; May be required for traffic between late Golgi and early endosomes.	Protein CBG26757.	0.470
CBG06228	ipla-1	Q61SD1	A8XHR3	Protein MON2 homolog; May be required for traffic between late Golgi and early endosomes.	Protein CBR-IPLA-1.	0.656
CBG06228	pad-1	Q61SD1	Q5WNI9	Protein MON2 homolog; May be required for traffic between late Golgi and early endosomes.	Protein pad-1; Essential for cell patterning during gastrulation. May be involved in protein traffic between late Golgi and early endosomes (By similarity).	0.922
CBG06228	tat-5	Q61SD1	A8XQ33	Protein MON2 homolog; May be required for traffic between late Golgi and early endosomes.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.722
CBG06228	tbc-3	Q61SD1	A8WV44	Protein MON2 homolog; May be required for traffic between late Golgi and early endosomes.	Protein CBG03461.	0.722
CBG08105	ath-1	A8X5T8	A8X629	Protein CBG08105.	Protein CBR-ATH-1.	0.672
CBG10435	CBG12559	A8XB75	A8XG15	Protein CBG10435.	Protein CBG12559.	0.779