(5 nodes) O-glycosylation of TSR domain-containing proteins network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG06873	Protein CBG06873. (935 aa)
	CBG09318	Protein CBG09318. (450 aa)
	madd-4	Protein CBR-MADD-4. (1042 aa)
	spon-1	Protein CBR-SPON-1. (854 aa)
	CBG17547	Protein CBG17547. (828 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG06873	CBG09318	A8X395	A8X9D7	Protein CBG06873.	Protein CBG09318.	0.546
CBG06873	spon-1	A8X395	A8XH06	Protein CBG06873.	Protein CBR-SPON-1.	0.423
CBG09318	CBG06873	A8X9D7	A8X395	Protein CBG09318.	Protein CBG06873.	0.546
CBG09318	CBG17547	A8X9D7	A8XR79	Protein CBG09318.	Protein CBG17547.	0.407
CBG09318	madd-4	A8X9D7	A8XFB9	Protein CBG09318.	Protein CBR-MADD-4.	0.606
CBG09318	spon-1	A8X9D7	A8XH06	Protein CBG09318.	Protein CBR-SPON-1.	0.725
CBG17547	CBG09318	A8XR79	A8X9D7	Protein CBG17547.	Protein CBG09318.	0.407
madd-4	CBG09318	A8XFB9	A8X9D7	Protein CBR-MADD-4.	Protein CBG09318.	0.606
spon-1	CBG06873	A8XH06	A8X395	Protein CBR-SPON-1.	Protein CBG06873.	0.423
spon-1	CBG09318	A8XH06	A8X9D7	Protein CBR-SPON-1.	Protein CBG09318.	0.725