(44 nodes) Mixed, incl. Chloride, and Cytosolic fatty-acid binding network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG24266	Protein CBG24266. (65 aa)
	CBG00879	Protein CBG00879. (949 aa)
	best-1	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (450 aa)
	best-23	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (405 aa)
	clh-5	Chloride channel protein. (801 aa)
	CBG03187	Protein CBG03187. (121 aa)
	CBG03186	Protein CBG03186. (115 aa)
	clh-1	Chloride channel protein. (975 aa)
	Cbr-clh-2	Chloride channel protein. (920 aa)
	best-22	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (506 aa)
	best-13	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (413 aa)
	CBG04877	Protein CBG04877. (518 aa)
	CBG05425	Protein CBG05425. (91 aa)
	best-16	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (406 aa)
	best-4	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (561 aa)
	CBG07249	Protein CBG07249. (460 aa)
	CBG08243	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (594 aa)
	mec-19	Protein CBG08708. (133 aa)
	best-14	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (363 aa)
	best-18	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (454 aa)
	best-5	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (469 aa)
	CBG11456	Protein CBG11456; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (137 aa)
	lbp-9	Protein CBR-LBP-9; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (137 aa)
	lbp-6	Protein CBR-LBP-6; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (133 aa)
	lbp-5	Protein CBR-LBP-5; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (136 aa)
	clh-3	Protein CBR-CLH-3; Belongs to the chloride channel (TC 2.A.49) family. (1103 aa)
	CBG13503	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (533 aa)
	best-21	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (387 aa)
	clh-4	Chloride channel protein. (1117 aa)
	sulp-6	Protein CBR-SULP-6. (873 aa)
	best-17	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (488 aa)
	clc-2	Protein CBR-CLC-2. (254 aa)
	clc-5	Protein CBR-CLC-5. (281 aa)
	CBG17306	Protein CBG17306. (351 aa)
	ttyh-1	Protein tweety homolog; Probable chloride channel; Belongs to the tweety family. (518 aa)
	best-15	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (681 aa)
	best-8	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (494 aa)
	CBG20553	Protein CBG20553. (233 aa)
	lbp-4	Protein CBR-LBP-4. (145 aa)
	CBG21625	Protein CBG21625. (748 aa)
	CBG23048	Protein CBG23048. (467 aa)
	lgc-49	Protein CBR-LGC-49; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (474 aa)
	CBG27793	Protein CBG27793. (215 aa)
	CBG08269	Serine/threonine-protein phosphatase. (458 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG03187	CBG17306	A8WSL2	A8XQT2	Protein CBG03187.	Protein CBG17306.	0.412
CBG03187	CBG24266	A8WSL2	A8WKC4	Protein CBG03187.	Protein CBG24266.	0.443
CBG07249	best-15	A8X546	A8XRP1	Protein CBG07249.	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family.	0.781
CBG07249	ttyh-1	A8X546	A8XQW0	Protein CBG07249.	Protein tweety homolog; Probable chloride channel; Belongs to the tweety family.	0.778
CBG08269	clh-3	E3CU01	A8XH35	Serine/threonine-protein phosphatase.	Protein CBR-CLH-3; Belongs to the chloride channel (TC 2.A.49) family.	0.743
CBG08269	clh-5	E3CU01	A8WSF6	Serine/threonine-protein phosphatase.	Chloride channel protein.	0.631
CBG17306	CBG03187	A8XQT2	A8WSL2	Protein CBG17306.	Protein CBG03187.	0.412
CBG17306	CBG24266	A8XQT2	A8WKC4	Protein CBG17306.	Protein CBG24266.	0.424
CBG20553	best-14	A8XY26	A8X8L1	Protein CBG20553.	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family.	0.436
CBG21625	clc-2	A8Y085	A8XPM1	Protein CBG21625.	Protein CBR-CLC-2.	0.744
CBG23048	best-15	A8Y3D2	A8XRP1	Protein CBG23048.	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family.	0.781
CBG23048	ttyh-1	A8Y3D2	A8XQW0	Protein CBG23048.	Protein tweety homolog; Probable chloride channel; Belongs to the tweety family.	0.778
CBG24266	CBG03187	A8WKC4	A8WSL2	Protein CBG24266.	Protein CBG03187.	0.443
CBG24266	CBG17306	A8WKC4	A8XQT2	Protein CBG24266.	Protein CBG17306.	0.424
CBG24266	clh-1	A8WKC4	A8WSR3	Protein CBG24266.	Chloride channel protein.	0.509
Cbr-clh-2	clc-2	A8WT82	A8XPM1	Chloride channel protein.	Protein CBR-CLC-2.	0.830
Cbr-clh-2	lgc-49	A8WT82	A8Y4M5	Chloride channel protein.	Protein CBR-LGC-49; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.634
Cbr-clh-2	sulp-6	A8WT82	A8XL47	Chloride channel protein.	Protein CBR-SULP-6.	0.655
best-1	mec-19	A8WQQ8	A8X776	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family.	Protein CBG08708.	0.665
best-13	clh-5	A8WV43	A8WSF6	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family.	Chloride channel protein.	0.642