(43 nodes) Mixed, incl. Defense response to Gram-negative bacterium, and Protein of unknown function (DUF1412) network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ttr-9	Protein CBR-TTR-9. (162 aa)
	CBG00604	Protein CBG00604. (163 aa)
	CBG00952	Protein CBG00952. (337 aa)
	CBG01095	Protein CBG01095. (304 aa)
	CBG02206	Protein CBG02206. (465 aa)
	CBG03058	Protein CBG03058. (158 aa)
	CBG02631	Protein CBG02631. (418 aa)
	nlp-62	Protein CBG04021. (89 aa)
	CBG04286	Protein CBG04286. (298 aa)
	CBG04410	Protein CBG04410. (151 aa)
	CBG06012	Protein CBG06012. (275 aa)
	CBG05924	Protein CBG05924. (93 aa)
	CBG08527	Protein CBG08527. (170 aa)
	CBG09638	Protein CBG09638. (122 aa)
	ttr-27	Protein CBR-TTR-27. (143 aa)
	CBG09304	Protein CBG09304. (130 aa)
	ttr-2	Protein CBR-TTR-2. (148 aa)
	ttr-3	Protein CBR-TTR-3. (149 aa)
	nspe-2.1	Protein CBG10323. (77 aa)
	nspe-2.2	Protein CBG10322. (77 aa)
	lips-15.1	Protein CBG10315. (225 aa)
	lips-15.2	Protein CBG10314. (301 aa)
	CBG10380	Protein CBG10380. (164 aa)
	CBG10935	Protein CBG10935. (358 aa)
	CBG10907	Protein CBG10907. (240 aa)
	CBG11273	Protein CBG11273. (203 aa)
	inx-15	Innexin; Structural component of the gap junctions. Belongs to the pannexin family. (381 aa)
	CBG12556	Protein CBG12556. (206 aa)
	pqn-94	Protein CBR-PQN-94. (114 aa)
	CBG12970	Protein CBG12970. (230 aa)
	ttr-58.1	Protein CBG13729. (141 aa)
	CBG14832	Protein CBG14832. (115 aa)
	CBG15400	Protein CBG15400. (143 aa)
	CBG16083	Protein CBG16083. (594 aa)
	CBG17278	Protein CBG17278. (150 aa)
	pqn-31	Protein CBR-PQN-31. (391 aa)
	CBG19627	Protein CBG19627. (193 aa)
	ttr-56	Protein CBG20294. (114 aa)
	CBG21752	Protein CBG21752. (164 aa)
	CBG21751	Protein CBG21751. (110 aa)
	CBG23308	Protein CBG23308. (270 aa)
	nspe-2.3	Protein CBG10321. (77 aa)
	CBG21753	DOMON domain-containing protein CBG21753. (168 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG00604	CBG01095	A8WNH2	A8WPJ6	Protein CBG00604.	Protein CBG01095.	0.644
CBG00604	CBG05924	A8WNH2	A8X1B7	Protein CBG00604.	Protein CBG05924.	0.642
CBG00604	CBG17278	A8WNH2	A8XQR3	Protein CBG00604.	Protein CBG17278.	0.644
CBG00604	inx-15	A8WNH2	A8XEF9	Protein CBG00604.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.626
CBG01095	CBG00604	A8WPJ6	A8WNH2	Protein CBG01095.	Protein CBG00604.	0.644
CBG01095	CBG05924	A8WPJ6	A8X1B7	Protein CBG01095.	Protein CBG05924.	0.643
CBG01095	CBG17278	A8WPJ6	A8XQR3	Protein CBG01095.	Protein CBG17278.	0.698
CBG01095	inx-15	A8WPJ6	A8XEF9	Protein CBG01095.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.626
CBG04410	CBG05924	A8WXH0	A8X1B7	Protein CBG04410.	Protein CBG05924.	0.633
CBG04410	CBG09304	A8WXH0	A8X9E8	Protein CBG04410.	Protein CBG09304.	0.741
CBG04410	CBG09638	A8WXH0	A8X8L2	Protein CBG04410.	Protein CBG09638.	0.741
CBG04410	CBG19627	A8WXH0	A8XW19	Protein CBG04410.	Protein CBG19627.	0.685
CBG04410	nlp-62	A8WXH0	A8WW04	Protein CBG04410.	Protein CBG04021.	0.741
CBG04410	ttr-3	A8WXH0	A8XA06	Protein CBG04410.	Protein CBR-TTR-3.	0.665
CBG04410	ttr-56	A8WXH0	A8XXF7	Protein CBG04410.	Protein CBG20294.	0.547
CBG05924	CBG00604	A8X1B7	A8WNH2	Protein CBG05924.	Protein CBG00604.	0.642
CBG05924	CBG01095	A8X1B7	A8WPJ6	Protein CBG05924.	Protein CBG01095.	0.643
CBG05924	CBG04410	A8X1B7	A8WXH0	Protein CBG05924.	Protein CBG04410.	0.633
CBG05924	CBG09304	A8X1B7	A8X9E8	Protein CBG05924.	Protein CBG09304.	0.743
CBG05924	CBG09638	A8X1B7	A8X8L2	Protein CBG05924.	Protein CBG09638.	0.743