(5 nodes) Insulin receptor complex, and Integrin beta subunit network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG01733	Protein CBG01733. (299 aa)
	CBG01732	Protein CBG01732. (549 aa)
	CBG04133	Protein CBG04133. (444 aa)
	Cbr-tag-83	Protein CBR-TAG-83. (244 aa)
	tns-1	Protein CBR-TAG-163. (938 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG01732	Cbr-tag-83	A8WQZ4	A8XKY7	Protein CBG01732.	Protein CBR-TAG-83.	0.736
CBG01732	tns-1	A8WQZ4	A8XKY8	Protein CBG01732.	Protein CBR-TAG-163.	0.736
CBG01733	Cbr-tag-83	A8WQZ3	A8XKY7	Protein CBG01733.	Protein CBR-TAG-83.	0.736
CBG01733	tns-1	A8WQZ3	A8XKY8	Protein CBG01733.	Protein CBR-TAG-163.	0.736
CBG04133	Cbr-tag-83	A8WVM7	A8XKY7	Protein CBG04133.	Protein CBR-TAG-83.	0.950
CBG04133	tns-1	A8WVM7	A8XKY8	Protein CBG04133.	Protein CBR-TAG-163.	0.950
Cbr-tag-83	CBG01732	A8XKY7	A8WQZ4	Protein CBR-TAG-83.	Protein CBG01732.	0.736
Cbr-tag-83	CBG01733	A8XKY7	A8WQZ3	Protein CBR-TAG-83.	Protein CBG01733.	0.736
Cbr-tag-83	CBG04133	A8XKY7	A8WVM7	Protein CBR-TAG-83.	Protein CBG04133.	0.950
Cbr-tag-83	tns-1	A8XKY7	A8XKY8	Protein CBR-TAG-83.	Protein CBR-TAG-163.	0.927
tns-1	CBG01732	A8XKY8	A8WQZ4	Protein CBR-TAG-163.	Protein CBG01732.	0.736
tns-1	CBG01733	A8XKY8	A8WQZ3	Protein CBR-TAG-163.	Protein CBG01733.	0.736
tns-1	CBG04133	A8XKY8	A8WVM7	Protein CBR-TAG-163.	Protein CBG04133.	0.950
tns-1	Cbr-tag-83	A8XKY8	A8XKY7	Protein CBR-TAG-163.	Protein CBR-TAG-83.	0.927