(55 nodes) Mixed, incl. Protein tyrosine phosphatase, catalytic domain, and Leucine-rich repeat, typical subtype network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG24681	Protein CBG24681. (313 aa)
	CBG00624	Protein CBG00624. (170 aa)
	CBG00613	Protein CBG00613. (693 aa)
	CBG00828	Protein CBG00828. (91 aa)
	CBG00946	Protein CBG00946. (508 aa)
	CBG01140	Protein CBG01140. (665 aa)
	CBG01653	Protein CBG01653. (239 aa)
	CBG02250	Protein CBG02250. (493 aa)
	lat-1	Protein CBR-LAT-1; Belongs to the G-protein coupled receptor 2 family. (1069 aa)
	CBG02996	Protein CBG02996. (95 aa)
	CBG02285	Protein CBG02285. (485 aa)
	CBG04012	Protein CBG04012. (571 aa)
	CBG04241	Protein CBG04241. (348 aa)
	CBG04774	Protein CBG04774. (141 aa)
	CBG04876	Protein CBG04876. (224 aa)
	lrch-1	Protein CBG05005. (662 aa)
	CBG05201	Protein CBG05201. (180 aa)
	clec-78	Protein CBR-CLEC-78. (2226 aa)
	CBG05788	Protein CBG05788. (87 aa)
	CBG07309	Protein CBG07309. (206 aa)
	CBG08352	Protein CBG08352. (368 aa)
	CBG10823	Protein CBG10823. (271 aa)
	CBG11501	Protein CBG11501. (931 aa)
	CBG12331	Protein CBG12331. (346 aa)
	CBG12739	Protein CBG12739. (546 aa)
	CBG13187	Protein CBG13187. (447 aa)
	CBG13752	Protein CBG13752. (215 aa)
	CBG15108	Protein CBG15108. (353 aa)
	CBG15158	Protein CBG15158. (1297 aa)
	CBG15654	Protein CBG15654. (1336 aa)
	CBG17382	Protein CBG17382. (739 aa)
	CBG19033	Protein CBG19033. (372 aa)
	CBG19364	Protein CBG19364. (232 aa)
	CBG19727	Protein CBG19727. (532 aa)
	lron-14	Protein CBG20033. (679 aa)
	CBG20059	Protein CBG20059. (623 aa)
	cam-1	Protein CBR-CAM-1. (916 aa)
	CBG20297	Protein CBG20297. (68 aa)
	iglr-3	Protein CBG22037. (496 aa)
	CBG22260	Protein CBG22260. (134 aa)
	CBG23012	Protein CBG23012. (580 aa)
	lron-12	Protein CBR-LRON-12. (515 aa)
	CBG22995	Protein CBG22995. (494 aa)
	CBG23377	Protein CBG23377. (503 aa)
	CBG12522	Protein CBG12522. (310 aa)
	CBG25508	Protein CBG25508. (117 aa)
	CBG25959	Protein CBG25959. (141 aa)
	CBG26795	Protein CBG26795. (332 aa)
	CBG25928	Protein CBG25928. (177 aa)
	CBG26417	Protein CBG26417. (86 aa)
	CBG25460	Protein CBG25460. (26 aa)
	CBG02263	Protein CBG02263. (65 aa)
	CBG02283	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. (127 aa)
	CBG16631	Protein CBG16631. (404 aa)
	CBG22558	Protein CBG22558. (78 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG00613	CBG25460	A8WNG4	B6ILH5	Protein CBG00613.	Protein CBG25460.	0.581
CBG00613	cam-1	A8WNG4	A8XXB9	Protein CBG00613.	Protein CBR-CAM-1.	0.943
CBG00613	clec-78	A8WNG4	A8WZP0	Protein CBG00613.	Protein CBR-CLEC-78.	0.465
CBG01140	lat-1	A8WPN4	A8WSJ9	Protein CBG01140.	Protein CBR-LAT-1; Belongs to the G-protein coupled receptor 2 family.	0.633
CBG02285	lat-1	A8WUP4	A8WSJ9	Protein CBG02285.	Protein CBR-LAT-1; Belongs to the G-protein coupled receptor 2 family.	0.633
CBG02996	CBG25460	A8WT16	B6ILH5	Protein CBG02996.	Protein CBG25460.	0.581
CBG02996	cam-1	A8WT16	A8XXB9	Protein CBG02996.	Protein CBR-CAM-1.	0.581
CBG02996	iglr-3	A8WT16	A8Y1E1	Protein CBG02996.	Protein CBG22037.	0.503
CBG05788	lat-1	A8X1M5	A8WSJ9	Protein CBG05788.	Protein CBR-LAT-1; Belongs to the G-protein coupled receptor 2 family.	0.633
CBG11501	CBG19033	A8XCU9	A8XUM1	Protein CBG11501.	Protein CBG19033.	0.436
CBG11501	CBG25928	A8XCU9	B6IK60	Protein CBG11501.	Protein CBG25928.	0.483
CBG11501	clec-78	A8XCU9	A8WZP0	Protein CBG11501.	Protein CBR-CLEC-78.	0.589
CBG19033	CBG11501	A8XUM1	A8XCU9	Protein CBG19033.	Protein CBG11501.	0.436
CBG19033	CBG25928	A8XUM1	B6IK60	Protein CBG19033.	Protein CBG25928.	0.550
CBG19033	clec-78	A8XUM1	A8WZP0	Protein CBG19033.	Protein CBR-CLEC-78.	0.544
CBG19033	lat-1	A8XUM1	A8WSJ9	Protein CBG19033.	Protein CBR-LAT-1; Belongs to the G-protein coupled receptor 2 family.	0.504
CBG22558	lat-1	H8WGZ8	A8WSJ9	Protein CBG22558.	Protein CBR-LAT-1; Belongs to the G-protein coupled receptor 2 family.	0.633
CBG23012	lat-1	A8Y3G1	A8WSJ9	Protein CBG23012.	Protein CBR-LAT-1; Belongs to the G-protein coupled receptor 2 family.	0.633
CBG25460	CBG00613	B6ILH5	A8WNG4	Protein CBG25460.	Protein CBG00613.	0.581
CBG25460	CBG02996	B6ILH5	A8WT16	Protein CBG25460.	Protein CBG02996.	0.581