(29 nodes) Mostly uncharacterized, incl. Tyrosine-protein kinase ephrin type A/B receptor-like, and Fibrinogen-like, C-terminal network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG24681	Protein CBG24681. (313 aa)
	CBG00613	Protein CBG00613. (693 aa)
	CBG01140	Protein CBG01140. (665 aa)
	lat-1	Protein CBR-LAT-1; Belongs to the G-protein coupled receptor 2 family. (1069 aa)
	CBG02996	Protein CBG02996. (95 aa)
	CBG02285	Protein CBG02285. (485 aa)
	lrch-1	Protein CBG05005. (662 aa)
	CBG05201	Protein CBG05201. (180 aa)
	clec-78	Protein CBR-CLEC-78. (2226 aa)
	CBG07309	Protein CBG07309. (206 aa)
	CBG11501	Protein CBG11501. (931 aa)
	CBG13752	Protein CBG13752. (215 aa)
	CBG15654	Protein CBG15654. (1336 aa)
	CBG19033	Protein CBG19033. (372 aa)
	CBG19364	Protein CBG19364. (232 aa)
	lron-14	Protein CBG20033. (679 aa)
	cam-1	Protein CBR-CAM-1. (916 aa)
	CBG20297	Protein CBG20297. (68 aa)
	iglr-3	Protein CBG22037. (496 aa)
	CBG23012	Protein CBG23012. (580 aa)
	CBG23377	Protein CBG23377. (503 aa)
	CBG25508	Protein CBG25508. (117 aa)
	CBG25959	Protein CBG25959. (141 aa)
	CBG26795	Protein CBG26795. (332 aa)
	CBG25928	Protein CBG25928. (177 aa)
	CBG26417	Protein CBG26417. (86 aa)
	CBG25460	Protein CBG25460. (26 aa)
	CBG16631	Protein CBG16631. (404 aa)
	CBG22558	Protein CBG22558. (78 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG00613	CBG25460	A8WNG4	B6ILH5	Protein CBG00613.	Protein CBG25460.	0.581
CBG00613	cam-1	A8WNG4	A8XXB9	Protein CBG00613.	Protein CBR-CAM-1.	0.943
CBG00613	clec-78	A8WNG4	A8WZP0	Protein CBG00613.	Protein CBR-CLEC-78.	0.465
CBG01140	lat-1	A8WPN4	A8WSJ9	Protein CBG01140.	Protein CBR-LAT-1; Belongs to the G-protein coupled receptor 2 family.	0.633
CBG02285	lat-1	A8WUP4	A8WSJ9	Protein CBG02285.	Protein CBR-LAT-1; Belongs to the G-protein coupled receptor 2 family.	0.633
CBG02996	CBG25460	A8WT16	B6ILH5	Protein CBG02996.	Protein CBG25460.	0.581
CBG02996	cam-1	A8WT16	A8XXB9	Protein CBG02996.	Protein CBR-CAM-1.	0.581
CBG02996	iglr-3	A8WT16	A8Y1E1	Protein CBG02996.	Protein CBG22037.	0.503
CBG11501	CBG19033	A8XCU9	A8XUM1	Protein CBG11501.	Protein CBG19033.	0.436
CBG11501	CBG25928	A8XCU9	B6IK60	Protein CBG11501.	Protein CBG25928.	0.483
CBG11501	clec-78	A8XCU9	A8WZP0	Protein CBG11501.	Protein CBR-CLEC-78.	0.589
CBG19033	CBG11501	A8XUM1	A8XCU9	Protein CBG19033.	Protein CBG11501.	0.436
CBG19033	CBG25928	A8XUM1	B6IK60	Protein CBG19033.	Protein CBG25928.	0.550
CBG19033	clec-78	A8XUM1	A8WZP0	Protein CBG19033.	Protein CBR-CLEC-78.	0.544
CBG19033	lat-1	A8XUM1	A8WSJ9	Protein CBG19033.	Protein CBR-LAT-1; Belongs to the G-protein coupled receptor 2 family.	0.504
CBG22558	lat-1	H8WGZ8	A8WSJ9	Protein CBG22558.	Protein CBR-LAT-1; Belongs to the G-protein coupled receptor 2 family.	0.633
CBG23012	lat-1	A8Y3G1	A8WSJ9	Protein CBG23012.	Protein CBR-LAT-1; Belongs to the G-protein coupled receptor 2 family.	0.633
CBG25460	CBG00613	B6ILH5	A8WNG4	Protein CBG25460.	Protein CBG00613.	0.581
CBG25460	CBG02996	B6ILH5	A8WT16	Protein CBG25460.	Protein CBG02996.	0.581
CBG25460	CBG25508	B6ILH5	B6IEP8	Protein CBG25460.	Protein CBG25508.	0.581