STRINGSTRING
vab-9 vab-9 hmr-1 hmr-1 jac-1 jac-1 zoo-1 zoo-1 hmp-2 hmp-2 hmp-1 hmp-1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
vab-9Protein CBR-VAB-9. (170 aa)
hmr-1Protein CBR-HMR-1; Cadherins are calcium-dependent cell adhesion proteins. (3093 aa)
jac-1Protein CBR-JAC-1. (1296 aa)
zoo-1Protein CBR-ZOO-1. (1208 aa)
hmp-2Protein CBR-HMP-2. (686 aa)
hmp-1Protein CBR-HMP-1. (917 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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