(17 nodes) Dorsal/ventral axon guidance, and Mesodermal cell migration network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	madd-2	Protein CBR-TRIM-9. (768 aa)
	unc-130	Protein CBR-UNC-130. (332 aa)
	seu-1	Protein CBR-SEU-1. (638 aa)
	slt-1	Protein CBR-SLT-1. (1376 aa)
	unc-6	Protein CBR-UNC-6. (621 aa)
	unc-73	Protein CBR-UNC-73. (1618 aa)
	sax-3	Protein CBR-SAX-3. (1295 aa)
	unc-40	Protein CBR-UNC-40. (1407 aa)
	unc-71	Protein CBR-UNC-71. (1045 aa)
	mig-10	Protein CBR-MIG-10. (739 aa)
	unc-115	Protein CBR-UNC-115. (623 aa)
	unc-34	Protein CBR-UNC-34. (459 aa)
	eva-1	Protein CBR-TAG-271. (467 aa)
	unc-5	Protein CBR-UNC-5. (922 aa)
	unc-129	Protein CBR-UNC-129. (404 aa)
	unc-53	Protein CBR-UNC-53, isoform a. (1778 aa)
	vab-8	Kinesin-like protein vab-8; Required for posterior migration of cells and axon growth cones during nervous system assembly (By similarity). In PLM neuron, regulates innexin unc-9 gap junction turnover by suppressing unc-9 transport out of the gap junctions (By similarity). Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. KIF26 subfamily. (1069 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
eva-1	madd-2	A8XWI9	A8WPI5	Protein CBR-TAG-271.	Protein CBR-TRIM-9.	0.639
eva-1	sax-3	A8XWI9	A8XJJ4	Protein CBR-TAG-271.	Protein CBR-SAX-3.	0.821
eva-1	slt-1	A8XWI9	A8X4J3	Protein CBR-TAG-271.	Protein CBR-SLT-1.	0.895
eva-1	unc-40	A8XWI9	A8XKZ7	Protein CBR-TAG-271.	Protein CBR-UNC-40.	0.688
eva-1	unc-5	A8XWI9	A8XWR5	Protein CBR-TAG-271.	Protein CBR-UNC-5.	0.786
eva-1	unc-6	A8XWI9	A8XCA2	Protein CBR-TAG-271.	Protein CBR-UNC-6.	0.481
eva-1	unc-73	A8XWI9	A8XEH9	Protein CBR-TAG-271.	Protein CBR-UNC-73.	0.408
eva-1	vab-8	A8XWI9	Q60LV7	Protein CBR-TAG-271.	Kinesin-like protein vab-8; Required for posterior migration of cells and axon growth cones during nervous system assembly (By similarity). In PLM neuron, regulates innexin unc-9 gap junction turnover by suppressing unc-9 transport out of the gap junctions (By similarity). Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. KIF26 subfamily.	0.487
madd-2	eva-1	A8WPI5	A8XWI9	Protein CBR-TRIM-9.	Protein CBR-TAG-271.	0.639
madd-2	mig-10	A8WPI5	A8XP76	Protein CBR-TRIM-9.	Protein CBR-MIG-10.	0.759
madd-2	sax-3	A8WPI5	A8XJJ4	Protein CBR-TRIM-9.	Protein CBR-SAX-3.	0.697
madd-2	slt-1	A8WPI5	A8X4J3	Protein CBR-TRIM-9.	Protein CBR-SLT-1.	0.758
madd-2	unc-115	A8WPI5	A8XQN2	Protein CBR-TRIM-9.	Protein CBR-UNC-115.	0.452
madd-2	unc-34	A8WPI5	A8XS08	Protein CBR-TRIM-9.	Protein CBR-UNC-34.	0.694
madd-2	unc-40	A8WPI5	A8XKZ7	Protein CBR-TRIM-9.	Protein CBR-UNC-40.	0.926
madd-2	unc-5	A8WPI5	A8XWR5	Protein CBR-TRIM-9.	Protein CBR-UNC-5.	0.649
madd-2	unc-6	A8WPI5	A8XCA2	Protein CBR-TRIM-9.	Protein CBR-UNC-6.	0.830
madd-2	unc-73	A8WPI5	A8XEH9	Protein CBR-TRIM-9.	Protein CBR-UNC-73.	0.675
mig-10	madd-2	A8XP76	A8WPI5	Protein CBR-MIG-10.	Protein CBR-TRIM-9.	0.759
mig-10	sax-3	A8XP76	A8XJJ4	Protein CBR-MIG-10.	Protein CBR-SAX-3.	0.530